Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MT-ND4P03905 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND4P03905 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND4P03905 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.6■□□□□ 0.57
MT-ND4P03905 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND4P03905 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND4P03905 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MT-ND4P03905 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.6■□□□□ 0.57
MT-ND4P03905 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND4P03905 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
MT-ND4P03905 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.6■□□□□ 0.57
MT-ND4P03905 KRT125P-201ENST00000546827 989 ntBASIC18.6■□□□□ 0.57
MT-ND4P03905 Z92544.1-202ENST00000571933 1220 ntBASIC18.6■□□□□ 0.57
MT-ND4P03905 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
MT-ND4P03905 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND4P03905 FEM1AP4-201ENST00000443167 1987 ntBASIC18.6■□□□□ 0.57
MT-ND4P03905 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND4P03905 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
MT-ND4P03905 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND4P03905 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND4P03905 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MT-ND4P03905 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.6■□□□□ 0.57
MT-ND4P03905 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
MT-ND4P03905 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 RARRES2P1-201ENST00000474487 481 ntBASIC18.59■□□□□ 0.57
MT-ND4P03905 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.59■□□□□ 0.57
MT-ND4P03905 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.59■□□□□ 0.57
MT-ND4P03905 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.59■□□□□ 0.57
MT-ND4P03905 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.59■□□□□ 0.57
MT-ND4P03905 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
MT-ND4P03905 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MT-ND4P03905 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
MT-ND4P03905 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
MT-ND4P03905 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
MT-ND4P03905 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.58■□□□□ 0.57
MT-ND4P03905 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.58■□□□□ 0.57
MT-ND4P03905 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MT-ND4P03905 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
MT-ND4P03905 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
MT-ND4P03905 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
MT-ND4P03905 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
MT-ND4P03905 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MT-ND4P03905 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MT-ND4P03905 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.58■□□□□ 0.57
MT-ND4P03905 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.58■□□□□ 0.56
MT-ND4P03905 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND4P03905 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
MT-ND4P03905 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND4P03905 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND4P03905 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.58■□□□□ 0.56
MT-ND4P03905 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.58■□□□□ 0.56
MT-ND4P03905 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND4P03905 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MT-ND4P03905 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.58■□□□□ 0.56
MT-ND4P03905 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
MT-ND4P03905 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.57■□□□□ 0.56
MT-ND4P03905 AC007952.6-201ENST00000573168 2673 ntBASIC18.57■□□□□ 0.56
MT-ND4P03905 AC003957.1-201ENST00000625108 2673 ntBASIC18.57■□□□□ 0.56
MT-ND4P03905 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND4P03905 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
MT-ND4P03905 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MT-ND4P03905 FP325331.1-202ENST00000623531 1380 ntBASIC18.56■□□□□ 0.56
MT-ND4P03905 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND4P03905 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND4P03905 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND4P03905 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
MT-ND4P03905 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.56■□□□□ 0.56
MT-ND4P03905 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.56■□□□□ 0.56
MT-ND4P03905 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND4P03905 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.56■□□□□ 0.56
MT-ND4P03905 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
MT-ND4P03905 MIR4787-201ENST00000607364 84 ntBASIC18.56■□□□□ 0.56
MT-ND4P03905 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND4P03905 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
MT-ND4P03905 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND4P03905 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND4P03905 LINC01006-201ENST00000333319 2292 ntBASIC18.56■□□□□ 0.56
MT-ND4P03905 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
MT-ND4P03905 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MT-ND4P03905 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MT-ND4P03905 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
MT-ND4P03905 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MT-ND4P03905 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
MT-ND4P03905 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MT-ND4P03905 LINC01529-204ENST00000636474 1715 ntBASIC18.55■□□□□ 0.56
MT-ND4P03905 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.55■□□□□ 0.56
MT-ND4P03905 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MT-ND4P03905 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MT-ND4P03905 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms