Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MT-ND1P03886 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MT-ND1P03886 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
MT-ND1P03886 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
MT-ND1P03886 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.2■□□□□ 0.82
MT-ND1P03886 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
MT-ND1P03886 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MT-ND1P03886 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MT-ND1P03886 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MT-ND1P03886 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.2■□□□□ 0.82
MT-ND1P03886 DUX4L4-201ENST00000566884 1269 ntBASIC20.2■□□□□ 0.82
MT-ND1P03886 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
MT-ND1P03886 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.2■□□□□ 0.82
MT-ND1P03886 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.2■□□□□ 0.82
MT-ND1P03886 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
MT-ND1P03886 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MT-ND1P03886 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MT-ND1P03886 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MT-ND1P03886 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.2■□□□□ 0.82
MT-ND1P03886 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
MT-ND1P03886 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND1P03886 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.19■□□□□ 0.82
MT-ND1P03886 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.19■□□□□ 0.82
MT-ND1P03886 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND1P03886 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND1P03886 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
MT-ND1P03886 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND1P03886 RARRES2P1-201ENST00000474487 481 ntBASIC20.19■□□□□ 0.82
MT-ND1P03886 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
MT-ND1P03886 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND1P03886 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
MT-ND1P03886 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND1P03886 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.19■□□□□ 0.82
MT-ND1P03886 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MT-ND1P03886 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
MT-ND1P03886 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND1P03886 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND1P03886 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
MT-ND1P03886 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND1P03886 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND1P03886 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
MT-ND1P03886 AC026471.6-201ENST00000622954 1905 ntBASIC20.18■□□□□ 0.82
MT-ND1P03886 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
MT-ND1P03886 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND1P03886 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.18■□□□□ 0.82
MT-ND1P03886 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND1P03886 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND1P03886 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MT-ND1P03886 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
MT-ND1P03886 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.17■□□□□ 0.82
MT-ND1P03886 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND1P03886 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND1P03886 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND1P03886 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND1P03886 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.17■□□□□ 0.82
MT-ND1P03886 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.17■□□□□ 0.82
MT-ND1P03886 MIR4787-201ENST00000607364 84 ntBASIC20.17■□□□□ 0.82
MT-ND1P03886 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.17■□□□□ 0.82
MT-ND1P03886 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND1P03886 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND1P03886 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MT-ND1P03886 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
MT-ND1P03886 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.17■□□□□ 0.82
MT-ND1P03886 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.17■□□□□ 0.82
MT-ND1P03886 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
MT-ND1P03886 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND1P03886 AC092667.1-201ENST00000434301 2586 ntBASIC20.16■□□□□ 0.82
MT-ND1P03886 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND1P03886 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND1P03886 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND1P03886 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND1P03886 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.16■□□□□ 0.82
MT-ND1P03886 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MT-ND1P03886 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
MT-ND1P03886 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.16■□□□□ 0.82
MT-ND1P03886 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
MT-ND1P03886 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
MT-ND1P03886 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND1P03886 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.15■□□□□ 0.82
MT-ND1P03886 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND1P03886 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND1P03886 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND1P03886 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND1P03886 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND1P03886 MTDHP2-201ENST00000601468 714 ntBASIC20.15■□□□□ 0.82
MT-ND1P03886 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.15■□□□□ 0.82
MT-ND1P03886 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND1P03886 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MT-ND1P03886 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
MT-ND1P03886 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MT-ND1P03886 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MT-ND1P03886 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MT-ND1P03886 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
MT-ND1P03886 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MT-ND1P03886 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MT-ND1P03886 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.14■□□□□ 0.81
MT-ND1P03886 AC239859.2-201ENST00000444165 318 ntBASIC20.14■□□□□ 0.81
MT-ND1P03886 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MT-ND1P03886 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.14■□□□□ 0.81
MT-ND1P03886 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms