Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HLA-DQA1P01909 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 RARRES2P2-201ENST00000394842 485 ntBASIC16.1■□□□□ 0.17
HLA-DQA1P01909 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.1■□□□□ 0.17
HLA-DQA1P01909 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.09■□□□□ 0.17
HLA-DQA1P01909 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DQA1P01909 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC16.08■□□□□ 0.17
HLA-DQA1P01909 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HLA-DQA1P01909 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 HES4-204ENST00000484667 667 ntTSL 3 BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 BRD4-212ENST00000630599 726 ntTSL 2 BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HLA-DQA1P01909 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DQA1P01909 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DQA1P01909 AC138932.1-201ENST00000534164 6830 ntBASIC16.06■□□□□ 0.16
HLA-DQA1P01909 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms