Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
ABCA1O95477 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
ABCA1O95477 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ABCA1O95477 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
ABCA1O95477 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ABCA1O95477 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
ABCA1O95477 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
ABCA1O95477 AL121832.2-201ENST00000610979 668 ntBASIC17.95■□□□□ 0.46
ABCA1O95477 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ABCA1O95477 MYCNOS-205ENST00000641950 531 ntBASIC17.95■□□□□ 0.46
ABCA1O95477 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
ABCA1O95477 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC17.94■□□□□ 0.46
ABCA1O95477 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ABCA1O95477 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC17.94■□□□□ 0.46
ABCA1O95477 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ABCA1O95477 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
ABCA1O95477 AC079140.4-201ENST00000507448 529 ntBASIC17.94■□□□□ 0.46
ABCA1O95477 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.94■□□□□ 0.46
ABCA1O95477 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.94■□□□□ 0.46
ABCA1O95477 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ABCA1O95477 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
ABCA1O95477 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ABCA1O95477 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ABCA1O95477 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
ABCA1O95477 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ABCA1O95477 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
ABCA1O95477 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ABCA1O95477 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ABCA1O95477 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ABCA1O95477 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.93■□□□□ 0.46
ABCA1O95477 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.93■□□□□ 0.46
ABCA1O95477 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.93■□□□□ 0.46
ABCA1O95477 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.93■□□□□ 0.46
ABCA1O95477 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.93■□□□□ 0.46
ABCA1O95477 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
ABCA1O95477 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
ABCA1O95477 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
ABCA1O95477 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.93■□□□□ 0.46
ABCA1O95477 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
ABCA1O95477 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ABCA1O95477 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
ABCA1O95477 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ABCA1O95477 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
ABCA1O95477 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ABCA1O95477 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ABCA1O95477 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
ABCA1O95477 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.92■□□□□ 0.46
ABCA1O95477 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.92■□□□□ 0.46
ABCA1O95477 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
ABCA1O95477 AC005181.1-201ENST00000604782 1256 ntBASIC17.92■□□□□ 0.46
ABCA1O95477 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
ABCA1O95477 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ABCA1O95477 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
ABCA1O95477 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ABCA1O95477 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ABCA1O95477 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
ABCA1O95477 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.92■□□□□ 0.46
ABCA1O95477 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
ABCA1O95477 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.92■□□□□ 0.46
ABCA1O95477 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.92■□□□□ 0.46
ABCA1O95477 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ABCA1O95477 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.91■□□□□ 0.46
ABCA1O95477 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.91■□□□□ 0.46
ABCA1O95477 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.91■□□□□ 0.46
ABCA1O95477 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ABCA1O95477 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.91■□□□□ 0.46
ABCA1O95477 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ABCA1O95477 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ABCA1O95477 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
ABCA1O95477 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.91■□□□□ 0.46
ABCA1O95477 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.91■□□□□ 0.46
ABCA1O95477 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
ABCA1O95477 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
ABCA1O95477 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ABCA1O95477 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
ABCA1O95477 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.91■□□□□ 0.46
ABCA1O95477 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.91■□□□□ 0.46
ABCA1O95477 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.91■□□□□ 0.46
ABCA1O95477 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ABCA1O95477 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
ABCA1O95477 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ABCA1O95477 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ABCA1O95477 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ABCA1O95477 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ABCA1O95477 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ABCA1O95477 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ABCA1O95477 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.9■□□□□ 0.46
ABCA1O95477 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.9■□□□□ 0.46
ABCA1O95477 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.9■□□□□ 0.46
ABCA1O95477 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ABCA1O95477 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
ABCA1O95477 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
ABCA1O95477 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC17.9■□□□□ 0.46
ABCA1O95477 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ABCA1O95477 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
ABCA1O95477 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
ABCA1O95477 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
ABCA1O95477 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.89■□□□□ 0.46
ABCA1O95477 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.89■□□□□ 0.46
ABCA1O95477 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms