Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBFD1O14562 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBFD1O14562 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBFD1O14562 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBFD1O14562 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBFD1O14562 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.86■□□□□ 0.93
UBFD1O14562 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBFD1O14562 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.85■□□□□ 0.93
UBFD1O14562 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
UBFD1O14562 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.85■□□□□ 0.93
UBFD1O14562 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBFD1O14562 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBFD1O14562 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.85■□□□□ 0.93
UBFD1O14562 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
UBFD1O14562 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UBFD1O14562 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
UBFD1O14562 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.84■□□□□ 0.93
UBFD1O14562 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.84■□□□□ 0.93
UBFD1O14562 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBFD1O14562 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBFD1O14562 AC010141.3-201ENST00000456659 717 ntBASIC20.84■□□□□ 0.93
UBFD1O14562 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBFD1O14562 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
UBFD1O14562 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.84■□□□□ 0.93
UBFD1O14562 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.84■□□□□ 0.93
UBFD1O14562 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
UBFD1O14562 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.84■□□□□ 0.93
UBFD1O14562 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UBFD1O14562 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
UBFD1O14562 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UBFD1O14562 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.83■□□□□ 0.93
UBFD1O14562 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
UBFD1O14562 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
UBFD1O14562 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBFD1O14562 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBFD1O14562 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
UBFD1O14562 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBFD1O14562 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBFD1O14562 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
UBFD1O14562 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBFD1O14562 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.83■□□□□ 0.93
UBFD1O14562 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.83■□□□□ 0.93
UBFD1O14562 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
UBFD1O14562 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
UBFD1O14562 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.83■□□□□ 0.93
UBFD1O14562 MIR4466-201ENST00000606121 54 ntBASIC20.83■□□□□ 0.93
UBFD1O14562 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.83■□□□□ 0.93
UBFD1O14562 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.83■□□□□ 0.92
UBFD1O14562 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.83■□□□□ 0.92
UBFD1O14562 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
UBFD1O14562 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
UBFD1O14562 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
UBFD1O14562 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
UBFD1O14562 OXCT2P1-201ENST00000447263 1535 ntBASIC20.83■□□□□ 0.92
UBFD1O14562 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
UBFD1O14562 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.83■□□□□ 0.92
UBFD1O14562 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
UBFD1O14562 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBFD1O14562 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UBFD1O14562 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UBFD1O14562 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.82■□□□□ 0.92
UBFD1O14562 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBFD1O14562 SERBP1P1-201ENST00000396021 1160 ntBASIC20.82■□□□□ 0.92
UBFD1O14562 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.82■□□□□ 0.92
UBFD1O14562 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UBFD1O14562 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
UBFD1O14562 AC092171.4-201ENST00000609130 632 ntBASIC20.82■□□□□ 0.92
UBFD1O14562 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.82■□□□□ 0.92
UBFD1O14562 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UBFD1O14562 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
UBFD1O14562 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
UBFD1O14562 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBFD1O14562 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UBFD1O14562 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
UBFD1O14562 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.81■□□□□ 0.92
UBFD1O14562 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.81■□□□□ 0.92
UBFD1O14562 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
UBFD1O14562 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBFD1O14562 AL356441.2-201ENST00000443009 864 ntBASIC20.81■□□□□ 0.92
UBFD1O14562 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.81■□□□□ 0.92
UBFD1O14562 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UBFD1O14562 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.81■□□□□ 0.92
UBFD1O14562 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.81■□□□□ 0.92
UBFD1O14562 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.81■□□□□ 0.92
UBFD1O14562 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBFD1O14562 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBFD1O14562 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBFD1O14562 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBFD1O14562 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBFD1O14562 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
UBFD1O14562 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.8■□□□□ 0.92
UBFD1O14562 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.8■□□□□ 0.92
UBFD1O14562 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UBFD1O14562 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.8■□□□□ 0.92
UBFD1O14562 AC087239.1-201ENST00000622671 572 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms