Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PRMT5-212ENST00000553787 579 ntTSL 420.9■□□□□ 0.944e-7■■■■■ 34.5
SF3B1O75533 GRK6-204ENST00000502598 557 ntTSL 420.89■□□□□ 0.934e-7■■■■■ 34.5
SF3B1O75533 UNKL-212ENST00000511095 924 ntTSL 420.87■□□□□ 0.934e-6■■■■■ 34.5
SF3B1O75533 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.934e-7■■■■■ 34.5
SF3B1O75533 MINOS1-202ENST00000462646 335 ntTSL 320.78■□□□□ 0.924e-6■■■■■ 34.5
SF3B1O75533 ATXN2L-207ENST00000561732 643 ntTSL 220.75■□□□□ 0.914e-8■■■■■ 34.5
SF3B1O75533 STXBP2-216ENST00000599648 472 ntTSL 220.69■□□□□ 0.94e-7■■■■■ 34.5
SF3B1O75533 NCSTN-207ENST00000437169 448 ntTSL 320.67■□□□□ 0.94e-6■■■■■ 34.5
SF3B1O75533 SPACA6-206ENST00000573151 660 ntTSL 220.67■□□□□ 0.94e-6■■■■■ 34.5
SF3B1O75533 PPT2-251ENST00000436118 633 ntTSL 420.55■□□□□ 0.884e-6■■■■■ 34.5
SF3B1O75533 ERF-203ENST00000593944 555 ntTSL 420.54■□□□□ 0.884e-7■■■■■ 34.5
SF3B1O75533 SRSF11-210ENST00000469170 668 ntTSL 220.44■□□□□ 0.864e-7■■■■■ 34.5
SF3B1O75533 EIF5-215ENST00000560763 723 ntTSL 220.39■□□□□ 0.854e-9■■■■■ 34.5
SF3B1O75533 PPP4R1-215ENST00000580182 582 ntTSL 320.32■□□□□ 0.844e-6■■■■■ 34.5
SF3B1O75533 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.833e-16■■■■■ 34.5
SF3B1O75533 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.814e-8■■■■■ 34.5
SF3B1O75533 SPACA6-212ENST00000576975 500 ntTSL 220.05■□□□□ 0.84e-6■■■■■ 34.5
SF3B1O75533 KATNBL1-211ENST00000560247 1708 ntTSL 1 (best)19.81■□□□□ 0.764e-7■■■■■ 34.5
SF3B1O75533 GGA1-223ENST00000491295 594 ntTSL 419.8■□□□□ 0.764e-6■■■■■ 34.5
SF3B1O75533 ADSL-204ENST00000466863 686 ntTSL 219.72■□□□□ 0.754e-6■■■■■ 34.5
SF3B1O75533 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.56■□□□□ 0.724e-7■■■■■ 34.5
SF3B1O75533 KATNBL1-202ENST00000540594 1267 ntTSL 219.55■□□□□ 0.724e-7■■■■■ 34.5
SF3B1O75533 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.48■□□□□ 0.714e-8■■■■■ 34.5
SF3B1O75533 NCSTN-208ENST00000438008 702 ntTSL 519.44■□□□□ 0.74e-6■■■■■ 34.5
SF3B1O75533 MBOAT7-213ENST00000495279 1585 ntTSL 219.41■□□□□ 0.74e-6■■■■■ 34.5
SF3B1O75533 AP2A2-216ENST00000529438 572 ntTSL 419.38■□□□□ 0.694e-6■■■■■ 34.5
SF3B1O75533 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.691e-7■■■■■ 34.5
SF3B1O75533 DUS1L-203ENST00000538833 1250 ntTSL 1 (best)19.26■□□□□ 0.671e-7■■■■■ 34.5
SF3B1O75533 MRPL28-207ENST00000461550 1478 ntTSL 519.11■□□□□ 0.654e-8■■■■■ 34.5
SF3B1O75533 MRPL28-208ENST00000469744 1467 ntTSL 1 (best)19.11■□□□□ 0.654e-8■■■■■ 34.5
SF3B1O75533 PRPF31-207ENST00000466404 1837 ntTSL 219.05■□□□□ 0.644e-7■■■■■ 34.5
SF3B1O75533 APTX-232ENST00000495360 1313 ntTSL 519.01■□□□□ 0.635e-11■■■■■ 34.5
SF3B1O75533 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.634e-8■■■■■ 34.5
SF3B1O75533 MRPL28-209ENST00000481453 2229 ntTSL 218.95■□□□□ 0.624e-8■■■■■ 34.5
SF3B1O75533 AUP1-204ENST00000463900 1645 ntTSL 1 (best)18.88■□□□□ 0.614e-6■■■■■ 34.5
SF3B1O75533 CNTROB-204ENST00000570782 752 ntTSL 218.85■□□□□ 0.614e-6■■■■■ 34.5
SF3B1O75533 IFRD1-213ENST00000476927 486 ntTSL 318.81■□□□□ 0.64e-8■■■■■ 34.5
SF3B1O75533 TRIB2-204ENST00000483034 600 ntTSL 218.81■□□□□ 0.64e-6■■■■■ 34.5
SF3B1O75533 EIF5-214ENST00000560338 580 ntTSL 318.78■□□□□ 0.64e-9■■■■■ 34.5
SF3B1O75533 ARL6IP4-212ENST00000456762 796 ntAPPRIS ALT2 TSL 218.75■□□□□ 0.594e-8■■■■■ 34.5
SF3B1O75533 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.594e-6■■■■■ 34.5
SF3B1O75533 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.581e-7■■■■■ 34.5
SF3B1O75533 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.58■□□□□ 0.564e-7■■■■■ 34.5
SF3B1O75533 PSMB4-206ENST00000495288 986 ntTSL 218.55■□□□□ 0.564e-9■■■■■ 34.5
SF3B1O75533 HEXDC-204ENST00000578130 853 ntTSL 218.51■□□□□ 0.554e-6■■■■■ 34.5
SF3B1O75533 AUP1-202ENST00000425118 1581 ntTSL 1 (best)18.45■□□□□ 0.544e-6■■■■■ 34.5
SF3B1O75533 NFE2L1-223ENST00000585299 537 ntTSL 418.38■□□□□ 0.534e-8■■■■■ 34.5
SF3B1O75533 NUPL2-207ENST00000485250 2010 ntTSL 518.36■□□□□ 0.534e-10■■■■■ 34.5
SF3B1O75533 STAT5A-212ENST00000591556 1140 ntTSL 1 (best)18.31■□□□□ 0.524e-6■■■■■ 34.5
SF3B1O75533 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.514e-9■■■■■ 34.5
SF3B1O75533 GRK6-208ENST00000511244 555 ntTSL 418.15■□□□□ 0.54e-7■■■■■ 34.5
SF3B1O75533 MRPL28-210ENST00000483764 1512 ntTSL 1 (best)18.13■□□□□ 0.494e-8■■■■■ 34.5
SF3B1O75533 APTX-210ENST00000460945 542 ntTSL 418.11■□□□□ 0.495e-11■■■■■ 34.5
SF3B1O75533 PPT2-253ENST00000478521 584 ntTSL 318.04■□□□□ 0.484e-6■■■■■ 34.5
SF3B1O75533 AC093752.1-203ENST00000504422 563 ntTSL 218■□□□□ 0.474e-7■■■■■ 34.5
SF3B1O75533 AC093752.1-204ENST00000508519 849 ntTSL 318■□□□□ 0.474e-7■■■■■ 34.5
SF3B1O75533 AC093752.1-205ENST00000515251 569 ntTSL 318■□□□□ 0.474e-7■■■■■ 34.5
SF3B1O75533 ERF-206ENST00000596818 566 ntTSL 317.95■□□□□ 0.464e-7■■■■■ 34.5
SF3B1O75533 NFE2L1-215ENST00000582574 556 ntTSL 317.93■□□□□ 0.464e-8■■■■■ 34.5
SF3B1O75533 EIF5-210ENST00000559249 704 ntTSL 217.89■□□□□ 0.454e-9■■■■■ 34.5
SF3B1O75533 ST13-204ENST00000455824 798 ntTSL 517.88■□□□□ 0.454e-6■■■■■ 34.5
SF3B1O75533 SPPL2A-207ENST00000560288 742 ntTSL 217.82■□□□□ 0.444e-6■■■■■ 34.5
SF3B1O75533 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.444e-10■■■■■ 34.5
SF3B1O75533 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.434e-7■■■■■ 34.5
SF3B1O75533 CAPN1-205ENST00000526954 754 ntTSL 517.75■□□□□ 0.434e-6■■■■■ 34.5
SF3B1O75533 RPL29-208ENST00000492277 537 ntTSL 317.73■□□□□ 0.433e-16■■■■■ 34.5
SF3B1O75533 RAD23A-210ENST00000593114 1691 ntTSL 517.7■□□□□ 0.424e-6■■■■■ 34.5
SF3B1O75533 AUP1-206ENST00000466894 1658 ntTSL 517.7■□□□□ 0.424e-6■■■■■ 34.5
SF3B1O75533 NFE2L1-207ENST00000579481 564 ntTSL 217.68■□□□□ 0.424e-8■■■■■ 34.5
SF3B1O75533 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.424e-8■■■■■ 34.5
SF3B1O75533 ZNF276-210ENST00000569426 436 ntTSL 317.67■□□□□ 0.424e-6■■■■■ 34.5
SF3B1O75533 GIPR-204ENST00000588816 709 ntTSL 517.63■□□□□ 0.414e-7■■■■■ 34.5
SF3B1O75533 NCSTN-211ENST00000467837 726 ntTSL 517.56■□□□□ 0.44e-6■■■■■ 34.5
SF3B1O75533 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.52■□□□□ 0.394e-7■■■■■ 34.5
SF3B1O75533 ILK-207ENST00000526711 1594 ntTSL 217.51■□□□□ 0.394e-7■■■■■ 34.5
SF3B1O75533 NFE2L1-221ENST00000585062 556 ntTSL 417.5■□□□□ 0.394e-8■■■■■ 34.5
SF3B1O75533 POLR2E-212ENST00000614705 589 ntTSL 417.47■□□□□ 0.394e-6■■■■■ 34.5
SF3B1O75533 AP2A2-207ENST00000526376 586 ntTSL 317.42■□□□□ 0.384e-6■■■■■ 34.5
SF3B1O75533 ZBTB38-219ENST00000513619 963 ntTSL 317.34■□□□□ 0.374e-6■■■■■ 34.5
SF3B1O75533 PSMB4-205ENST00000493673 1650 ntTSL 517.29■□□□□ 0.364e-9■■■■■ 34.5
SF3B1O75533 ZDHHC8-204ENST00000436518 557 ntTSL 417.13■□□□□ 0.334e-6■■■■■ 34.5
SF3B1O75533 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.1■□□□□ 0.334e-7■■■■■ 34.5
SF3B1O75533 PTOV1-208ENST00000597730 327 ntTSL 217.03■□□□□ 0.324e-6■■■■■ 34.5
SF3B1O75533 CAPN1-213ENST00000527897 879 ntTSL 317.01■□□□□ 0.314e-6■■■■■ 34.5
SF3B1O75533 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.314e-8■■■■■ 34.5
SF3B1O75533 RAD23A-202ENST00000586375 894 ntTSL 316.96■□□□□ 0.314e-6■■■■■ 34.5
SF3B1O75533 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.34e-7■■■■■ 34.5
SF3B1O75533 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.34e-8■■■■■ 34.5
SF3B1O75533 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.88■□□□□ 0.294e-7■■■■■ 34.5
SF3B1O75533 GGA1-202ENST00000326597 946 ntTSL 416.85■□□□□ 0.294e-6■■■■■ 34.5
SF3B1O75533 STARD3-227ENST00000584850 2442 ntTSL 216.82■□□□□ 0.284e-7■■■■■ 34.5
SF3B1O75533 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.284e-6■■■■■ 34.5
SF3B1O75533 DEF8-213ENST00000563848 649 ntTSL 316.76■□□□□ 0.274e-9■■■■■ 34.5
SF3B1O75533 RHOA-205ENST00000445425 633 ntTSL 316.7■□□□□ 0.264e-7■■■■■ 34.5
SF3B1O75533 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.65■□□□□ 0.264e-6■■■■■ 34.5
SF3B1O75533 CEP57L1-211ENST00000520610 1120 ntTSL 516.65■□□□□ 0.264e-6■■■■■ 34.5
SF3B1O75533 SLC39A10-208ENST00000464301 571 ntTSL 416.61■□□□□ 0.254e-6■■■■■ 34.5
SF3B1O75533 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.244e-6■■■■■ 34.5
SF3B1O75533 MBOAT7-212ENST00000494142 3039 ntTSL 1 (best)16.49■□□□□ 0.234e-6■■■■■ 34.5
SF3B1O75533 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.224e-6■■■■■ 34.5
Retrieved 100 of 46,956 protein–RNA pairs in 4708.7 ms