Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
EXOSC4Q9NPD3 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 AC012354.3-201ENST00000623734 483 ntBASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.41■□□□□ 0.7
EXOSC4Q9NPD3 AF106564.1-201ENST00000607058 2553 ntBASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
EXOSC4Q9NPD3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.39■□□□□ 0.7
EXOSC4Q9NPD3 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
EXOSC4Q9NPD3 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
EXOSC4Q9NPD3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
EXOSC4Q9NPD3 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 LINC01521-201ENST00000504184 1943 ntBASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.39■□□□□ 0.69
EXOSC4Q9NPD3 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 AIRN-201ENST00000601203 4374 ntBASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 AC144652.1-201ENST00000609974 1624 ntBASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
EXOSC4Q9NPD3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 Z98882.1-201ENST00000622160 2253 ntBASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 AC010980.1-201ENST00000587192 1142 ntBASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 LINC01960-201ENST00000563759 1884 ntBASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC4Q9NPD3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC4Q9NPD3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms