Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 SMPD5-203ENST00000639008 1464 ntBASIC20.26■□□□□ 0.83
NR1H4Q96RI1 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H4Q96RI1 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H4Q96RI1 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H4Q96RI1 KRT18P10-201ENST00000388836 1287 ntBASIC20.26■□□□□ 0.83
NR1H4Q96RI1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H4Q96RI1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H4Q96RI1 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.26■□□□□ 0.83
NR1H4Q96RI1 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NR1H4Q96RI1 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NR1H4Q96RI1 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 AC144652.1-201ENST00000609974 1624 ntBASIC20.24■□□□□ 0.83
NR1H4Q96RI1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.24■□□□□ 0.83
NR1H4Q96RI1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.23■□□□□ 0.83
NR1H4Q96RI1 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
NR1H4Q96RI1 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H4Q96RI1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H4Q96RI1 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
NR1H4Q96RI1 AC025884.2-201ENST00000553429 711 ntBASIC20.23■□□□□ 0.83
NR1H4Q96RI1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.23■□□□□ 0.83
NR1H4Q96RI1 AC022413.1-201ENST00000624602 984 ntBASIC20.23■□□□□ 0.83
NR1H4Q96RI1 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NR1H4Q96RI1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NR1H4Q96RI1 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NR1H4Q96RI1 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 GABARAPL3-202ENST00000624044 1851 ntBASIC20.2■□□□□ 0.82
NR1H4Q96RI1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.2■□□□□ 0.82
NR1H4Q96RI1 AFG3L1P-217ENST00000557444 2447 ntBASIC20.19■□□□□ 0.82
NR1H4Q96RI1 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
NR1H4Q96RI1 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms