Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 AL137784.2-201ENST00000607332 1000 ntBASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.68■□□□□ 0.9
CLIP3Q96DZ5 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 C9orf163-202ENST00000624034 2573 ntBASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.67■□□□□ 0.9
CLIP3Q96DZ5 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 SMUG1P1-201ENST00000590640 811 ntBASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 DUSP8P3-201ENST00000399571 1760 ntBASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLIP3Q96DZ5 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.65■□□□□ 0.9
CLIP3Q96DZ5 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
CLIP3Q96DZ5 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.64■□□□□ 0.9
CLIP3Q96DZ5 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLIP3Q96DZ5 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.64■□□□□ 0.9
CLIP3Q96DZ5 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.9
CLIP3Q96DZ5 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLIP3Q96DZ5 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 TPRG1LP1-201ENST00000598702 760 ntBASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CLIP3Q96DZ5 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLIP3Q96DZ5 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLIP3Q96DZ5 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLIP3Q96DZ5 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLIP3Q96DZ5 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CLIP3Q96DZ5 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLIP3Q96DZ5 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.62■□□□□ 0.89
CLIP3Q96DZ5 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms