Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TTC1-202ENST00000518560 543 ntTSL 511.95□□□□□ -0.51e-6■■■□□ 17
DDX55Q8NHQ9 TTC1-205ENST00000522793 1432 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.591e-6■■■□□ 17
DDX55Q8NHQ9 PSMD13-210ENST00000529679 507 ntTSL 211.12□□□□□ -0.637e-13■■■□□ 17
DDX55Q8NHQ9 TRIM26-266ENST00000437089 3250 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.636e-7■■■□□ 17
DDX55Q8NHQ9 TTC1-201ENST00000231238 1467 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.651e-6■■■□□ 17
DDX55Q8NHQ9 AC087289.3-203ENST00000587556 550 ntAPPRIS P5 TSL 4 BASIC10.96□□□□□ -0.654e-7■■■□□ 17
DDX55Q8NHQ9 CREB3L2-201ENST00000330387 7412 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.697e-9■■■□□ 17
DDX55Q8NHQ9 SIN3A-201ENST00000360439 5050 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.696e-7■■■□□ 17
DDX55Q8NHQ9 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC10.53□□□□□ -0.727e-9■■■□□ 17
DDX55Q8NHQ9 CDV3-202ENST00000420115 3621 ntTSL 2 BASIC10.5□□□□□ -0.737e-8■■■□□ 17
DDX55Q8NHQ9 TFDP1-207ENST00000494812 736 ntTSL 310.45□□□□□ -0.742e-6■■■□□ 17
DDX55Q8NHQ9 ST13-207ENST00000620312 944 ntTSL 1 (best) BASIC10.14□□□□□ -0.796e-7■■■□□ 17
DDX55Q8NHQ9 CDV3-209ENST00000515421 1305 ntTSL 3 BASIC9.92□□□□□ -0.827e-8■■■□□ 17
DDX55Q8NHQ9 TTC1-204ENST00000522073 1119 ntTSL 28.99□□□□□ -0.971e-6■■■□□ 17
DDX55Q8NHQ9 AC004148.2-201ENST00000575890 1938 ntTSL 5 BASIC8.9□□□□□ -0.986e-7■■■□□ 17
DDX55Q8NHQ9 SLIRP-203ENST00000554074 445 ntTSL 38.23□□□□□ -1.098e-11■■■□□ 17
DDX55Q8NHQ9 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.316e-7■■■□□ 17
DDX55Q8NHQ9 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.717e-9■■■□□ 17
DDX55Q8NHQ9 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.98□□□□□ -1.777e-9■■■□□ 17
DDX55Q8NHQ9 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.562e-8■■■□□ 17
DDX55Q8NHQ9 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.652e-12■■■□□ 17
DDX55Q8NHQ9 PPM1G-202ENST00000472077 3752 ntTSL 29.72□□□□□ -0.852e-12■■■□□ 17
DDX55Q8NHQ9 AZGP1-205ENST00000483612 679 ntTSL 318.63■□□□□ 0.573e-7■■■□□ 17
DDX55Q8NHQ9 AZGP1-203ENST00000419575 719 ntTSL 316.18■□□□□ 0.183e-7■■■□□ 17
DDX55Q8NHQ9 GRAMD1A-214ENST00000603907 450 ntTSL 224.82■■□□□ 1.562e-6■■■□□ 17
DDX55Q8NHQ9 GRAMD1A-207ENST00000598118 2277 ntTSL 1 (best)20.8■□□□□ 0.922e-6■■■□□ 17
DDX55Q8NHQ9 SLCO4A1-207ENST00000495889 543 ntTSL 321.47■■□□□ 1.035e-10■■■□□ 17
DDX55Q8NHQ9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.75e-10■■■□□ 17
DDX55Q8NHQ9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.535e-10■■■□□ 17
DDX55Q8NHQ9 SLCO4A1-203ENST00000451793 856 ntTSL 215.93■□□□□ 0.145e-10■■■□□ 17
DDX55Q8NHQ9 SLCO4A1-208ENST00000497209 3092 ntTSL 1 (best)15.78■□□□□ 0.125e-10■■■□□ 17
DDX55Q8NHQ9 SLCO4A1-205ENST00000466961 819 ntTSL 315.77■□□□□ 0.125e-10■■■□□ 17
DDX55Q8NHQ9 SLCO4A1-204ENST00000466818 556 ntTSL 310.81□□□□□ -0.685e-10■■■□□ 17
DDX55Q8NHQ9 YIF1A-212ENST00000528575 532 ntTSL 322.79■■□□□ 1.248e-7■■■□□ 16.9
DDX55Q8NHQ9 YIF1A-204ENST00000431556 619 ntTSL 219.07■□□□□ 0.648e-7■■■□□ 16.9
DDX55Q8NHQ9 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.578e-8■■■□□ 16.9
DDX55Q8NHQ9 SGSH-213ENST00000575282 5562 ntTSL 1 (best)15.44■□□□□ 0.068e-8■■■□□ 16.9
DDX55Q8NHQ9 SGSH-210ENST00000573150 2612 ntTSL 215.06■□□□□ 08e-8■■■□□ 16.9
DDX55Q8NHQ9 SGSH-209ENST00000572257 581 ntTSL 413.47□□□□□ -0.258e-8■■■□□ 16.9
DDX55Q8NHQ9 SGSH-206ENST00000571156 554 ntTSL 413.16□□□□□ -0.38e-8■■■□□ 16.9
DDX55Q8NHQ9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.081e-6■■■□□ 16.9
DDX55Q8NHQ9 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.061e-9■■■□□ 16.9
DDX55Q8NHQ9 EMC9-206ENST00000560403 872 ntTSL 2 BASIC26.06■■□□□ 1.761e-6■■■□□ 16.9
DDX55Q8NHQ9 SIRT7-210ENST00000572902 909 ntTSL 325.93■■□□□ 1.741e-6■■■□□ 16.9
DDX55Q8NHQ9 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.681e-6■■■□□ 16.9
DDX55Q8NHQ9 STX5-203ENST00000394690 1568 ntTSL 5 BASIC24.35■■□□□ 1.491e-6■■■□□ 16.9
DDX55Q8NHQ9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.481e-6■■■□□ 16.9
DDX55Q8NHQ9 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC24.14■■□□□ 1.461e-9■■■□□ 16.9
DDX55Q8NHQ9 STX5-207ENST00000491231 1719 ntTSL 523.71■■□□□ 1.391e-6■■■□□ 16.9
DDX55Q8NHQ9 STX5-208ENST00000492066 1627 ntTSL 523.06■■□□□ 1.281e-6■■■□□ 16.9
DDX55Q8NHQ9 STAT6-222ENST00000557563 871 ntTSL 222.81■■□□□ 1.241e-6■■■□□ 16.9
DDX55Q8NHQ9 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.191e-6■■■□□ 16.9
DDX55Q8NHQ9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.76■■□□□ 1.071e-9■■■□□ 16.9
DDX55Q8NHQ9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.49■■□□□ 1.031e-6■■■□□ 16.9
DDX55Q8NHQ9 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.47■■□□□ 1.031e-6■■■□□ 16.9
DDX55Q8NHQ9 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.811e-6■■■□□ 16.9
DDX55Q8NHQ9 LONP1-211ENST00000590558 2884 ntTSL 519.91■□□□□ 0.781e-9■■■□□ 16.9
DDX55Q8NHQ9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.61■□□□□ 0.731e-9■■■□□ 16.9
DDX55Q8NHQ9 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.711e-9■■■□□ 16.9
DDX55Q8NHQ9 EMC9-207ENST00000560600 771 ntTSL 519.44■□□□□ 0.71e-6■■■□□ 16.9
DDX55Q8NHQ9 LONP1-208ENST00000589473 793 ntTSL 318.78■□□□□ 0.61e-9■■■□□ 16.9
DDX55Q8NHQ9 NINL-205ENST00000464285 1514 ntTSL 218.47■□□□□ 0.551e-6■■■□□ 16.9
DDX55Q8NHQ9 SMAP2-202ENST00000372718 2939 ntAPPRIS P1 TSL 1 (best)18.4■□□□□ 0.542e-23■■■□□ 16.9
DDX55Q8NHQ9 PPT1-208ENST00000529905 1836 ntTSL 517.23■□□□□ 0.351e-9■■■□□ 16.9
DDX55Q8NHQ9 STAT6-215ENST00000555222 2185 ntTSL 217.12■□□□□ 0.339e-9■■■□□ 16.9
DDX55Q8NHQ9 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.241e-6■■■□□ 16.9
DDX55Q8NHQ9 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.43■□□□□ 0.221e-9■■■□□ 16.9
DDX55Q8NHQ9 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.211e-6■■■□□ 16.9
DDX55Q8NHQ9 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.131e-6■■■□□ 16.9
DDX55Q8NHQ9 LONP1-206ENST00000587552 2816 ntTSL 215.82■□□□□ 0.121e-9■■■□□ 16.9
DDX55Q8NHQ9 MST1P2-201ENST00000457982 2291 ntBASIC15.75■□□□□ 0.111e-6■■■□□ 16.9
DDX55Q8NHQ9 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC15.3■□□□□ 0.041e-9■■■□□ 16.9
DDX55Q8NHQ9 SEC16A-208ENST00000467838 1988 ntTSL 214.96□□□□□ -0.011e-6■■■□□ 16.9
DDX55Q8NHQ9 UQCRH-201ENST00000311672 604 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.141e-6■■■□□ 16.9
DDX55Q8NHQ9 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.153e-7■■■□□ 16.9
DDX55Q8NHQ9 METTL17-210ENST00000554751 556 ntTSL 514.1□□□□□ -0.151e-6■■■□□ 16.9
DDX55Q8NHQ9 METTL17-204ENST00000553441 635 ntTSL 214.08□□□□□ -0.161e-6■■■□□ 16.9
DDX55Q8NHQ9 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC14.03□□□□□ -0.161e-6■■■□□ 16.9
DDX55Q8NHQ9 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.183e-7■■■□□ 16.9
DDX55Q8NHQ9 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.23e-7■■■□□ 16.9
DDX55Q8NHQ9 STAT6-204ENST00000538913 2879 ntTSL 2 BASIC13.78□□□□□ -0.21e-6■■■□□ 16.9
DDX55Q8NHQ9 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.231e-6■■■□□ 16.9
DDX55Q8NHQ9 STAT6-220ENST00000556155 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.231e-6■■■□□ 16.9
DDX55Q8NHQ9 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.231e-6■■■□□ 16.9
DDX55Q8NHQ9 STAT2-207ENST00000556539 3278 ntTSL 1 (best)13.33□□□□□ -0.281e-6■■■□□ 16.9
DDX55Q8NHQ9 SEC16A-207ENST00000453963 4834 ntAPPRIS ALT2 TSL 1 (best)13.32□□□□□ -0.281e-6■■■□□ 16.9
DDX55Q8NHQ9 STAT2-201ENST00000314128 3259 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.281e-6■■■□□ 16.9
DDX55Q8NHQ9 METTL17-225ENST00000557701 552 ntTSL 213.21□□□□□ -0.291e-6■■■□□ 16.9
DDX55Q8NHQ9 DHRS11-214ENST00000617959 976 ntTSL 212.96□□□□□ -0.331e-9■■■□□ 16.9
DDX55Q8NHQ9 STAT6-203ENST00000537215 2886 ntTSL 2 BASIC12.9□□□□□ -0.341e-6■■■□□ 16.9
DDX55Q8NHQ9 DHRS11-209ENST00000610443 4505 nt12.89□□□□□ -0.351e-9■■■□□ 16.9
DDX55Q8NHQ9 SMAP2-205ENST00000539317 2501 ntTSL 2 BASIC12.52□□□□□ -0.42e-23■■■□□ 16.9
DDX55Q8NHQ9 STAT6-212ENST00000554764 2777 ntTSL 212.36□□□□□ -0.431e-6■■■□□ 16.9
DDX55Q8NHQ9 NUMA1-202ENST00000358965 7227 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.433e-7■■■□□ 16.9
DDX55Q8NHQ9 STAT6-205ENST00000543873 3119 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.441e-6■■■□□ 16.9
DDX55Q8NHQ9 SEC16A-203ENST00000313050 8806 ntAPPRIS P3 TSL 2 BASIC12.2□□□□□ -0.461e-6■■■□□ 16.9
DDX55Q8NHQ9 NUMA1-220ENST00000541584 3557 ntAPPRIS ALT2 TSL 1 (best)12.07□□□□□ -0.483e-7■■■□□ 16.9
DDX55Q8NHQ9 SEC16A-205ENST00000371706 8093 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.51e-6■■■□□ 16.9
DDX55Q8NHQ9 METTL17-205ENST00000553536 824 ntTSL 211.08□□□□□ -0.641e-6■■■□□ 16.9
DDX55Q8NHQ9 EMC9-203ENST00000558045 565 nt11.07□□□□□ -0.641e-6■■■□□ 16.9
Retrieved 100 of 15,504 protein–RNA pairs in 144.5 ms