Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC12.64□□□□□ -0.39
RPS28P62857 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
RPS28P62857 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC12.64□□□□□ -0.39
RPS28P62857 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
RPS28P62857 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
RPS28P62857 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
RPS28P62857 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC12.64□□□□□ -0.39
RPS28P62857 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC12.64□□□□□ -0.39
RPS28P62857 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
RPS28P62857 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC12.63□□□□□ -0.39
RPS28P62857 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
RPS28P62857 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC12.63□□□□□ -0.39
RPS28P62857 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
RPS28P62857 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
RPS28P62857 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC12.63□□□□□ -0.39
RPS28P62857 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
RPS28P62857 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC12.63□□□□□ -0.39
RPS28P62857 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC12.63□□□□□ -0.39
RPS28P62857 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 BOC-212ENST00000485230 2173 ntTSL 2 BASIC12.63□□□□□ -0.39
RPS28P62857 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 AL049812.1-201ENST00000432563 2267 ntBASIC12.63□□□□□ -0.39
RPS28P62857 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RPS28P62857 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC12.62□□□□□ -0.39
RPS28P62857 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC12.62□□□□□ -0.39
RPS28P62857 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC12.62□□□□□ -0.39
RPS28P62857 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
RPS28P62857 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
RPS28P62857 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC12.62□□□□□ -0.39
RPS28P62857 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC12.62□□□□□ -0.39
RPS28P62857 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC12.62□□□□□ -0.39
RPS28P62857 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RPS28P62857 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC12.62□□□□□ -0.39
RPS28P62857 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC12.61□□□□□ -0.39
RPS28P62857 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC12.61□□□□□ -0.39
RPS28P62857 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC12.61□□□□□ -0.39
RPS28P62857 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
RPS28P62857 AC090340.1-201ENST00000620778 4980 ntBASIC12.61□□□□□ -0.39
RPS28P62857 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
RPS28P62857 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
RPS28P62857 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC12.61□□□□□ -0.39
RPS28P62857 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 FEM1AP1-201ENST00000431297 1995 ntBASIC12.61□□□□□ -0.39
RPS28P62857 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 AC007613.1-201ENST00000572811 2597 ntBASIC12.61□□□□□ -0.39
RPS28P62857 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
RPS28P62857 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC12.61□□□□□ -0.39
RPS28P62857 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
RPS28P62857 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPS28P62857 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
RPS28P62857 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms