Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH3P20585 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH3P20585 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH3P20585 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
MSH3P20585 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.4■■□□□ 1.02
MSH3P20585 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH3P20585 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH3P20585 SMUG1P1-201ENST00000590640 811 ntBASIC21.4■■□□□ 1.02
MSH3P20585 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.4■■□□□ 1.02
MSH3P20585 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.4■■□□□ 1.02
MSH3P20585 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH3P20585 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH3P20585 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.4■■□□□ 1.02
MSH3P20585 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
MSH3P20585 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH3P20585 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
MSH3P20585 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH3P20585 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH3P20585 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
MSH3P20585 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH3P20585 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.39■■□□□ 1.01
MSH3P20585 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
MSH3P20585 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
MSH3P20585 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.39■■□□□ 1.01
MSH3P20585 AL358852.1-201ENST00000623174 1268 ntBASIC21.39■■□□□ 1.01
MSH3P20585 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.39■■□□□ 1.01
MSH3P20585 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
MSH3P20585 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH3P20585 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.39■■□□□ 1.01
MSH3P20585 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.39■■□□□ 1.01
MSH3P20585 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH3P20585 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH3P20585 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH3P20585 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH3P20585 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH3P20585 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH3P20585 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.38■■□□□ 1.01
MSH3P20585 AC012414.1-201ENST00000556676 535 ntBASIC21.38■■□□□ 1.01
MSH3P20585 AL354811.1-201ENST00000610286 706 ntBASIC21.38■■□□□ 1.01
MSH3P20585 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH3P20585 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.38■■□□□ 1.01
MSH3P20585 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
MSH3P20585 LINC00565-201ENST00000562710 2331 ntBASIC21.38■■□□□ 1.01
MSH3P20585 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH3P20585 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
MSH3P20585 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.37■■□□□ 1.01
MSH3P20585 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.37■■□□□ 1.01
MSH3P20585 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
MSH3P20585 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH3P20585 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH3P20585 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH3P20585 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH3P20585 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH3P20585 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH3P20585 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.36■■□□□ 1.01
MSH3P20585 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.36■■□□□ 1.01
MSH3P20585 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH3P20585 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.36■■□□□ 1.01
MSH3P20585 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.36■■□□□ 1.01
MSH3P20585 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.36■■□□□ 1.01
MSH3P20585 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH3P20585 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH3P20585 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH3P20585 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
MSH3P20585 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH3P20585 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH3P20585 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.35■■□□□ 1.01
MSH3P20585 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH3P20585 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH3P20585 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH3P20585 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH3P20585 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH3P20585 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH3P20585 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH3P20585 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH3P20585 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH3P20585 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms