Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.38
TPM1P09493 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
TPM1P09493 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
TPM1P09493 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.64■■□□□ 1.37
TPM1P09493 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.64■■□□□ 1.37
TPM1P09493 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
TPM1P09493 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
TPM1P09493 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
TPM1P09493 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
TPM1P09493 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
TPM1P09493 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC23.64■■□□□ 1.37
TPM1P09493 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.63■■□□□ 1.37
TPM1P09493 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.63■■□□□ 1.37
TPM1P09493 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TPM1P09493 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TPM1P09493 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.63■■□□□ 1.37
TPM1P09493 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.63■■□□□ 1.37
TPM1P09493 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TPM1P09493 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
TPM1P09493 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.63■■□□□ 1.37
TPM1P09493 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
TPM1P09493 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TPM1P09493 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TPM1P09493 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
TPM1P09493 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TPM1P09493 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.62■■□□□ 1.37
TPM1P09493 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.62■■□□□ 1.37
TPM1P09493 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.62■■□□□ 1.37
TPM1P09493 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TPM1P09493 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TPM1P09493 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
TPM1P09493 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TPM1P09493 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.62■■□□□ 1.37
TPM1P09493 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
TPM1P09493 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.62■■□□□ 1.37
TPM1P09493 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.61■■□□□ 1.37
TPM1P09493 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TPM1P09493 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC23.61■■□□□ 1.37
TPM1P09493 AC005229.4-201ENST00000610085 2198 ntBASIC23.61■■□□□ 1.37
TPM1P09493 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TPM1P09493 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TPM1P09493 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
TPM1P09493 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TPM1P09493 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
TPM1P09493 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC23.61■■□□□ 1.37
TPM1P09493 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.6■■□□□ 1.37
TPM1P09493 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
TPM1P09493 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC23.6■■□□□ 1.37
TPM1P09493 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
TPM1P09493 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC23.6■■□□□ 1.37
TPM1P09493 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.6■■□□□ 1.37
TPM1P09493 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
TPM1P09493 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
TPM1P09493 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
TPM1P09493 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
TPM1P09493 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC23.6■■□□□ 1.37
TPM1P09493 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TPM1P09493 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TPM1P09493 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
TPM1P09493 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
TPM1P09493 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC23.59■■□□□ 1.37
TPM1P09493 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TPM1P09493 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TPM1P09493 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC23.59■■□□□ 1.37
TPM1P09493 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TPM1P09493 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.59■■□□□ 1.37
TPM1P09493 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.59■■□□□ 1.37
TPM1P09493 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.59■■□□□ 1.37
TPM1P09493 MTDHP2-201ENST00000601468 714 ntBASIC23.59■■□□□ 1.37
TPM1P09493 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TPM1P09493 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
TPM1P09493 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
TPM1P09493 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.59■■□□□ 1.37
TPM1P09493 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
TPM1P09493 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.59■■□□□ 1.37
TPM1P09493 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
TPM1P09493 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.58■■□□□ 1.37
TPM1P09493 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.58■■□□□ 1.37
TPM1P09493 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.58■■□□□ 1.37
TPM1P09493 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
TPM1P09493 AC092028.1-203ENST00000608262 953 ntBASIC23.58■■□□□ 1.37
TPM1P09493 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
TPM1P09493 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
TPM1P09493 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC23.58■■□□□ 1.36
TPM1P09493 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
TPM1P09493 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC23.58■■□□□ 1.36
TPM1P09493 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
TPM1P09493 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
TPM1P09493 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
TPM1P09493 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TPM1P09493 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TPM1P09493 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TPM1P09493 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TPM1P09493 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TPM1P09493 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
TPM1P09493 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
TPM1P09493 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
TPM1P09493 KRT125P-201ENST00000546827 989 ntBASIC23.57■■□□□ 1.36
TPM1P09493 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
TPM1P09493 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms