Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PGK1P00558 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PGK1P00558 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC24.15■■□□□ 1.46
PGK1P00558 AC010141.2-201ENST00000452426 721 ntBASIC24.15■■□□□ 1.46
PGK1P00558 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC24.15■■□□□ 1.46
PGK1P00558 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC24.15■■□□□ 1.46
PGK1P00558 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
PGK1P00558 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
PGK1P00558 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC24.15■■□□□ 1.46
PGK1P00558 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC24.15■■□□□ 1.46
PGK1P00558 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
PGK1P00558 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
PGK1P00558 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PGK1P00558 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PGK1P00558 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PGK1P00558 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PGK1P00558 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC24.14■■□□□ 1.45
PGK1P00558 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PGK1P00558 AC073210.2-201ENST00000430369 194 ntBASIC24.14■■□□□ 1.45
PGK1P00558 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC24.14■■□□□ 1.45
PGK1P00558 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PGK1P00558 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
PGK1P00558 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC24.13■■□□□ 1.45
PGK1P00558 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
PGK1P00558 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
PGK1P00558 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PGK1P00558 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
PGK1P00558 AC138907.5-202ENST00000569484 235 ntBASIC24.13■■□□□ 1.45
PGK1P00558 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PGK1P00558 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PGK1P00558 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PGK1P00558 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PGK1P00558 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC24.12■■□□□ 1.45
PGK1P00558 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
PGK1P00558 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PGK1P00558 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
PGK1P00558 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
PGK1P00558 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC24.12■■□□□ 1.45
PGK1P00558 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PGK1P00558 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
PGK1P00558 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
PGK1P00558 BMP1-204ENST00000397814 836 ntTSL 4 BASIC24.11■■□□□ 1.45
PGK1P00558 UQCRFS1P1-201ENST00000435169 820 ntBASIC24.11■■□□□ 1.45
PGK1P00558 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
PGK1P00558 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC24.11■■□□□ 1.45
PGK1P00558 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC24.11■■□□□ 1.45
PGK1P00558 AC008687.6-201ENST00000596318 630 ntBASIC24.11■■□□□ 1.45
PGK1P00558 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PGK1P00558 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PGK1P00558 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PGK1P00558 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC24.1■■□□□ 1.45
PGK1P00558 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC24.1■■□□□ 1.45
PGK1P00558 AC079089.2-201ENST00000531211 1277 ntBASIC24.1■■□□□ 1.45
PGK1P00558 KRT18P20-201ENST00000548986 1279 ntBASIC24.1■■□□□ 1.45
PGK1P00558 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC24.1■■□□□ 1.45
PGK1P00558 AP004607.7-201ENST00000527152 1677 ntBASIC24.1■■□□□ 1.45
PGK1P00558 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
PGK1P00558 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.1■■□□□ 1.45
PGK1P00558 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PGK1P00558 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PGK1P00558 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC24.09■■□□□ 1.45
PGK1P00558 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PGK1P00558 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC24.09■■□□□ 1.45
PGK1P00558 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PGK1P00558 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PGK1P00558 AC093827.2-201ENST00000512654 315 ntBASIC24.09■■□□□ 1.45
PGK1P00558 DET1-205ENST00000558413 583 ntTSL 4 BASIC24.09■■□□□ 1.45
PGK1P00558 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC24.09■■□□□ 1.45
PGK1P00558 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PGK1P00558 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
PGK1P00558 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PGK1P00558 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PGK1P00558 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PGK1P00558 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC24.08■■□□□ 1.45
PGK1P00558 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC24.08■■□□□ 1.45
PGK1P00558 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC24.08■■□□□ 1.45
PGK1P00558 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PGK1P00558 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
PGK1P00558 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
PGK1P00558 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.44
PGK1P00558 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
PGK1P00558 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.44
PGK1P00558 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PGK1P00558 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
PGK1P00558 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PGK1P00558 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC24.07■■□□□ 1.44
PGK1P00558 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
PGK1P00558 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC24.07■■□□□ 1.44
PGK1P00558 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC24.06■■□□□ 1.44
PGK1P00558 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PGK1P00558 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PGK1P00558 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
PGK1P00558 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PGK1P00558 FXN-202ENST00000396364 980 ntTSL 5 BASIC24.06■■□□□ 1.44
PGK1P00558 POU5F1P3-201ENST00000428824 1078 ntBASIC24.06■■□□□ 1.44
PGK1P00558 TERF1P5-201ENST00000477545 1207 ntBASIC24.06■■□□□ 1.44
PGK1P00558 RNA5SP413-201ENST00000516373 109 ntBASIC24.06■■□□□ 1.44
PGK1P00558 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC24.06■■□□□ 1.44
PGK1P00558 MIR4758-201ENST00000577688 71 ntBASIC24.06■■□□□ 1.44
PGK1P00558 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms