Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.4■□□□□ 0.7
SSX4O60224 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SSX4O60224 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX4O60224 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX4O60224 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX4O60224 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX4O60224 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX4O60224 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SSX4O60224 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SSX4O60224 AC007952.6-201ENST00000573168 2673 ntBASIC19.39■□□□□ 0.7
SSX4O60224 AC003957.1-201ENST00000625108 2673 ntBASIC19.39■□□□□ 0.7
SSX4O60224 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SSX4O60224 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX4O60224 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX4O60224 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX4O60224 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SSX4O60224 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX4O60224 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX4O60224 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SSX4O60224 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.39■□□□□ 0.69
SSX4O60224 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SSX4O60224 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.39■□□□□ 0.69
SSX4O60224 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX4O60224 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
SSX4O60224 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.39■□□□□ 0.69
SSX4O60224 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SSX4O60224 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SSX4O60224 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX4O60224 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX4O60224 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX4O60224 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SSX4O60224 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.38■□□□□ 0.69
SSX4O60224 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SSX4O60224 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
SSX4O60224 RARRES2P6-201ENST00000567333 442 ntBASIC19.38■□□□□ 0.69
SSX4O60224 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SSX4O60224 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.38■□□□□ 0.69
SSX4O60224 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.38■□□□□ 0.69
SSX4O60224 SYT6-210ENST00000641643 1587 ntBASIC19.38■□□□□ 0.69
SSX4O60224 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SSX4O60224 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.38■□□□□ 0.69
SSX4O60224 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SSX4O60224 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX4O60224 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SSX4O60224 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX4O60224 AC131274.2-201ENST00000580697 1507 ntBASIC19.37■□□□□ 0.69
SSX4O60224 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX4O60224 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX4O60224 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
SSX4O60224 AC092171.4-201ENST00000609130 632 ntBASIC19.37■□□□□ 0.69
SSX4O60224 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SSX4O60224 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.37■□□□□ 0.69
SSX4O60224 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SSX4O60224 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX4O60224 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SSX4O60224 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.36■□□□□ 0.69
SSX4O60224 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SSX4O60224 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX4O60224 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.36■□□□□ 0.69
SSX4O60224 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.36■□□□□ 0.69
SSX4O60224 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX4O60224 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX4O60224 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX4O60224 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SSX4O60224 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SSX4O60224 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SSX4O60224 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SSX4O60224 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.35■□□□□ 0.69
SSX4O60224 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SSX4O60224 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX4O60224 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.35■□□□□ 0.69
SSX4O60224 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SSX4O60224 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
SSX4O60224 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX4O60224 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.35■□□□□ 0.69
SSX4O60224 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX4O60224 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.35■□□□□ 0.69
SSX4O60224 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX4O60224 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX4O60224 AC105265.2-201ENST00000467189 838 ntBASIC19.35■□□□□ 0.69
SSX4O60224 AF213884.3-201ENST00000563833 479 ntBASIC19.35■□□□□ 0.69
SSX4O60224 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.35■□□□□ 0.69
SSX4O60224 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.35■□□□□ 0.69
SSX4O60224 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SSX4O60224 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SSX4O60224 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SSX4O60224 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SSX4O60224 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SSX4O60224 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.34■□□□□ 0.69
SSX4O60224 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms