Protein–RNA interactions for Protein: A6NGU7

LINC01546, Putative uncharacterized protein encoded by LINC01546, humanhuman

Predictions only

Length 62 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01546A6NGU7 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
LINC01546A6NGU7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC01546A6NGU7 MIR6765-201ENST00000614092 87 ntBASIC15.27■□□□□ 0.04
LINC01546A6NGU7 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC15.27■□□□□ 0.03
LINC01546A6NGU7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
LINC01546A6NGU7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LINC01546A6NGU7 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LINC01546A6NGU7 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LINC01546A6NGU7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC15.27■□□□□ 0.03
LINC01546A6NGU7 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC15.27■□□□□ 0.03
LINC01546A6NGU7 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LINC01546A6NGU7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LINC01546A6NGU7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 CEP120-209ENST00000515110 606 ntTSL 3 BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC01546A6NGU7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 AC026471.6-201ENST00000622954 1905 ntBASIC15.25■□□□□ 0.03
LINC01546A6NGU7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LINC01546A6NGU7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 RPS2P35-201ENST00000443417 897 ntBASIC15.24■□□□□ 0.03
LINC01546A6NGU7 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 AC073314.1-201ENST00000568729 2216 ntBASIC15.24■□□□□ 0.03
LINC01546A6NGU7 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 REST-206ENST00000612429 1376 ntTSL 5 BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 REST-207ENST00000616975 1370 ntTSL 5 BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
LINC01546A6NGU7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LINC01546A6NGU7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms