Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV5A0A0B4J249 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV5A0A0B4J249 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TRAV5A0A0B4J249 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TRAV5A0A0B4J249 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TRAV5A0A0B4J249 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
TRAV5A0A0B4J249 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV5A0A0B4J249 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TRAV5A0A0B4J249 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 BX664725.1-201ENST00000438252 379 ntBASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
TRAV5A0A0B4J249 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 AL157384.1-201ENST00000445995 2473 ntBASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV5A0A0B4J249 AC026471.6-201ENST00000622954 1905 ntBASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAV5A0A0B4J249 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 HES6-204ENST00000409182 863 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 AC092028.1-203ENST00000608262 953 ntBASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV5A0A0B4J249 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 C17orf82-201ENST00000623772 1530 ntBASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV5A0A0B4J249 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms