Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TM9SF3Q9HD45 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.62■■□□□ 1.05
TM9SF3Q9HD45 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.62■■□□□ 1.05
TM9SF3Q9HD45 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.62■■□□□ 1.05
TM9SF3Q9HD45 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TM9SF3Q9HD45 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TM9SF3Q9HD45 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.61■■□□□ 1.05
TM9SF3Q9HD45 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 AC079140.4-201ENST00000507448 529 ntBASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TM9SF3Q9HD45 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.59■■□□□ 1.05
TM9SF3Q9HD45 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
TM9SF3Q9HD45 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.59■■□□□ 1.05
TM9SF3Q9HD45 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.59■■□□□ 1.05
TM9SF3Q9HD45 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TM9SF3Q9HD45 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
TM9SF3Q9HD45 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
TM9SF3Q9HD45 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.58■■□□□ 1.04
TM9SF3Q9HD45 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.58■■□□□ 1.04
TM9SF3Q9HD45 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TM9SF3Q9HD45 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TM9SF3Q9HD45 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
TM9SF3Q9HD45 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 CLDN5-201ENST00000403084 2357 ntBASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TM9SF3Q9HD45 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 ESRRAP2-201ENST00000418437 1549 ntBASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 C9orf163-202ENST00000624034 2573 ntBASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TM9SF3Q9HD45 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms