Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 AC142381.2-201ENST00000566120 298 ntBASIC19.65■□□□□ 0.74
ATG4DQ86TL0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4DQ86TL0 OR7E47P-201ENST00000546390 1422 ntBASIC19.65■□□□□ 0.74
ATG4DQ86TL0 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4DQ86TL0 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4DQ86TL0 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATG4DQ86TL0 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ATG4DQ86TL0 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4DQ86TL0 ZNRF2P3-201ENST00000424200 374 ntBASIC19.64■□□□□ 0.73
ATG4DQ86TL0 SUDS3P1-201ENST00000505831 966 ntBASIC19.64■□□□□ 0.73
ATG4DQ86TL0 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.64■□□□□ 0.73
ATG4DQ86TL0 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.64■□□□□ 0.73
ATG4DQ86TL0 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
ATG4DQ86TL0 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4DQ86TL0 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.64■□□□□ 0.73
ATG4DQ86TL0 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.64■□□□□ 0.73
ATG4DQ86TL0 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4DQ86TL0 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATG4DQ86TL0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
ATG4DQ86TL0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4DQ86TL0 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4DQ86TL0 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4DQ86TL0 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4DQ86TL0 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4DQ86TL0 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ATG4DQ86TL0 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
ATG4DQ86TL0 BX842568.3-201ENST00000418104 571 ntBASIC19.63■□□□□ 0.73
ATG4DQ86TL0 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATG4DQ86TL0 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
ATG4DQ86TL0 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.63■□□□□ 0.73
ATG4DQ86TL0 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4DQ86TL0 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4DQ86TL0 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4DQ86TL0 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
ATG4DQ86TL0 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
ATG4DQ86TL0 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4DQ86TL0 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4DQ86TL0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
ATG4DQ86TL0 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATG4DQ86TL0 FAM99A-202ENST00000538190 1989 ntBASIC19.62■□□□□ 0.73
ATG4DQ86TL0 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.62■□□□□ 0.73
ATG4DQ86TL0 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 AF213884.3-201ENST00000563833 479 ntBASIC19.61■□□□□ 0.73
ATG4DQ86TL0 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.61■□□□□ 0.73
ATG4DQ86TL0 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATG4DQ86TL0 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 FBXW4P1-201ENST00000426721 2239 ntBASIC19.6■□□□□ 0.73
ATG4DQ86TL0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.6■□□□□ 0.73
ATG4DQ86TL0 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 AC010542.4-201ENST00000563151 1910 ntBASIC19.59■□□□□ 0.73
ATG4DQ86TL0 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 EDA-201ENST00000338901 1233 ntBASIC19.59■□□□□ 0.73
ATG4DQ86TL0 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 AP001330.3-201ENST00000520123 633 ntBASIC19.59■□□□□ 0.73
ATG4DQ86TL0 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.59■□□□□ 0.73
ATG4DQ86TL0 AC233992.3-201ENST00000607491 485 ntBASIC19.59■□□□□ 0.73
ATG4DQ86TL0 AL355001.2-201ENST00000620617 1191 ntBASIC19.59■□□□□ 0.73
ATG4DQ86TL0 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms