Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CR1P49238 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CR1P49238 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CR1P49238 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CR1P49238 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CR1P49238 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CR1P49238 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CR1P49238 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CX3CR1P49238 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.96■□□□□ 0.63
CX3CR1P49238 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CR1P49238 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.95■□□□□ 0.62
CX3CR1P49238 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CR1P49238 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CR1P49238 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CR1P49238 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CR1P49238 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CR1P49238 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CR1P49238 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CR1P49238 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CR1P49238 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CX3CR1P49238 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CX3CR1P49238 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC18.95■□□□□ 0.62
CX3CR1P49238 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.95■□□□□ 0.62
CX3CR1P49238 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.95■□□□□ 0.62
CX3CR1P49238 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CX3CR1P49238 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
CX3CR1P49238 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.95■□□□□ 0.62
CX3CR1P49238 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
CX3CR1P49238 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CR1P49238 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CR1P49238 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.94■□□□□ 0.62
CX3CR1P49238 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.94■□□□□ 0.62
CX3CR1P49238 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.94■□□□□ 0.62
CX3CR1P49238 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CX3CR1P49238 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.94■□□□□ 0.62
CX3CR1P49238 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CX3CR1P49238 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.94■□□□□ 0.62
CX3CR1P49238 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.94■□□□□ 0.62
CX3CR1P49238 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CR1P49238 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CX3CR1P49238 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
CX3CR1P49238 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CX3CR1P49238 OR2I1P-207ENST00000453522 948 ntBASIC18.93■□□□□ 0.62
CX3CR1P49238 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.93■□□□□ 0.62
CX3CR1P49238 MIR4466-201ENST00000606121 54 ntBASIC18.93■□□□□ 0.62
CX3CR1P49238 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CX3CR1P49238 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CR1P49238 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CX3CR1P49238 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.93■□□□□ 0.62
CX3CR1P49238 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
CX3CR1P49238 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CX3CR1P49238 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
CX3CR1P49238 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CX3CR1P49238 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CX3CR1P49238 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.92■□□□□ 0.62
CX3CR1P49238 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CX3CR1P49238 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.92■□□□□ 0.62
CX3CR1P49238 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.92■□□□□ 0.62
CX3CR1P49238 AC007375.3-201ENST00000600936 2314 ntBASIC18.92■□□□□ 0.62
CX3CR1P49238 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CX3CR1P49238 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CX3CR1P49238 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.92■□□□□ 0.62
CX3CR1P49238 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.91■□□□□ 0.62
CX3CR1P49238 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CX3CR1P49238 SYT6-210ENST00000641643 1587 ntBASIC18.91■□□□□ 0.62
CX3CR1P49238 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 AC079089.2-201ENST00000531211 1277 ntBASIC18.91■□□□□ 0.62
CX3CR1P49238 AC068587.7-201ENST00000641602 218 ntBASIC18.91■□□□□ 0.62
CX3CR1P49238 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CR1P49238 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 135.4 ms