Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SOX3P41225 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.26■□□□□ 0.83
SOX3P41225 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX3P41225 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SOX3P41225 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.26■□□□□ 0.83
SOX3P41225 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX3P41225 AP005435.1-201ENST00000529293 1178 ntBASIC20.26■□□□□ 0.83
SOX3P41225 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.26■□□□□ 0.83
SOX3P41225 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.26■□□□□ 0.83
SOX3P41225 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX3P41225 AL137060.1-201ENST00000618151 2648 ntBASIC20.26■□□□□ 0.83
SOX3P41225 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX3P41225 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX3P41225 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX3P41225 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX3P41225 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX3P41225 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.25■□□□□ 0.83
SOX3P41225 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX3P41225 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SOX3P41225 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SOX3P41225 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SOX3P41225 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.25■□□□□ 0.83
SOX3P41225 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.25■□□□□ 0.83
SOX3P41225 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SOX3P41225 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX3P41225 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX3P41225 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.25■□□□□ 0.83
SOX3P41225 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SOX3P41225 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX3P41225 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.24■□□□□ 0.83
SOX3P41225 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.24■□□□□ 0.83
SOX3P41225 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX3P41225 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SOX3P41225 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SOX3P41225 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SOX3P41225 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX3P41225 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SOX3P41225 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SOX3P41225 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SOX3P41225 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX3P41225 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX3P41225 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX3P41225 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SOX3P41225 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SOX3P41225 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SOX3P41225 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SOX3P41225 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SOX3P41225 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SOX3P41225 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SOX3P41225 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SOX3P41225 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.23■□□□□ 0.83
SOX3P41225 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.23■□□□□ 0.83
SOX3P41225 RARRES2P6-201ENST00000567333 442 ntBASIC20.23■□□□□ 0.83
SOX3P41225 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.23■□□□□ 0.83
SOX3P41225 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.23■□□□□ 0.83
SOX3P41225 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SOX3P41225 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SOX3P41225 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SOX3P41225 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.23■□□□□ 0.83
SOX3P41225 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.23■□□□□ 0.83
SOX3P41225 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.23■□□□□ 0.83
SOX3P41225 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.23■□□□□ 0.83
SOX3P41225 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SOX3P41225 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SOX3P41225 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.22■□□□□ 0.83
SOX3P41225 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SOX3P41225 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SOX3P41225 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SOX3P41225 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SOX3P41225 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SOX3P41225 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SOX3P41225 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
SOX3P41225 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.22■□□□□ 0.83
SOX3P41225 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SOX3P41225 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.21■□□□□ 0.83
SOX3P41225 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SOX3P41225 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SOX3P41225 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.21■□□□□ 0.83
SOX3P41225 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.21■□□□□ 0.83
SOX3P41225 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.21■□□□□ 0.83
SOX3P41225 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.21■□□□□ 0.83
SOX3P41225 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.21■□□□□ 0.83
SOX3P41225 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SOX3P41225 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SOX3P41225 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SOX3P41225 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.2■□□□□ 0.82
SOX3P41225 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
SOX3P41225 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SOX3P41225 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SOX3P41225 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SOX3P41225 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SOX3P41225 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SOX3P41225 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SOX3P41225 MIR572-201ENST00000384983 95 ntBASIC20.2■□□□□ 0.82
SOX3P41225 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SOX3P41225 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SOX3P41225 AC242852.2-201ENST00000615738 1807 ntBASIC20.2■□□□□ 0.82
SOX3P41225 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SOX3P41225 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.2■□□□□ 0.82
SOX3P41225 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms