Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 AC092296.2-201ENST00000589470 999 ntBASIC16.23■□□□□ 0.19
HLA-DQA1P01909 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.23■□□□□ 0.19
HLA-DQA1P01909 SMPD5-203ENST00000639008 1464 ntBASIC16.22■□□□□ 0.19
HLA-DQA1P01909 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 AF106564.1-201ENST00000607058 2553 ntBASIC16.22■□□□□ 0.19
HLA-DQA1P01909 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.22■□□□□ 0.19
HLA-DQA1P01909 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 STK32C-205ENST00000456004 607 ntTSL 2 BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 ECEL1P2-201ENST00000461596 1295 ntBASIC16.21■□□□□ 0.19
HLA-DQA1P01909 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HLA-DQA1P01909 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.21■□□□□ 0.18
HLA-DQA1P01909 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
HLA-DQA1P01909 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.21■□□□□ 0.18
HLA-DQA1P01909 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DQA1P01909 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DQA1P01909 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 SSSCA1-AS1-201ENST00000567594 614 ntBASIC16.18■□□□□ 0.18
HLA-DQA1P01909 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC16.18■□□□□ 0.18
HLA-DQA1P01909 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DQA1P01909 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms