Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 OR2I1P-207ENST00000453522 948 ntBASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 TRIR-202ENST00000588213 841 ntTSL 3 BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 AL031602.1-201ENST00000633169 911 ntBASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV4A0A0B4J268 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 AL138724.1-201ENST00000606771 1088 ntBASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAV4A0A0B4J268 SYT6-210ENST00000641643 1587 ntBASIC15.52■□□□□ 0.07
TRAV4A0A0B4J268 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV4A0A0B4J268 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRAV4A0A0B4J268 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC15.52■□□□□ 0.07
TRAV4A0A0B4J268 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC15.52■□□□□ 0.07
TRAV4A0A0B4J268 STX4-202ENST00000394998 1498 ntTSL 2 BASIC15.52■□□□□ 0.07
TRAV4A0A0B4J268 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
TRAV4A0A0B4J268 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC15.52■□□□□ 0.07
TRAV4A0A0B4J268 MYB-221ENST00000527615 2381 ntTSL 5 BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 PTCHD3P2-201ENST00000424937 1205 ntBASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 AC087239.1-201ENST00000622671 572 ntBASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRAV4A0A0B4J268 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 RBM38-205ENST00000440234 686 ntTSL 2 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 USP45-205ENST00000472914 1617 ntTSL 5 BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRAV4A0A0B4J268 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 MIR4466-201ENST00000606121 54 ntBASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
TRAV4A0A0B4J268 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms