Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC28.3■■■□□ 2.12
PDGFBP01127 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PDGFBP01127 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC28.28■■■□□ 2.12
PDGFBP01127 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PDGFBP01127 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PDGFBP01127 DUX4L29-201ENST00000425409 679 ntBASIC28.27■■■□□ 2.12
PDGFBP01127 HSD17B1P1-201ENST00000590052 955 ntBASIC28.27■■■□□ 2.12
PDGFBP01127 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.25■■■□□ 2.11
PDGFBP01127 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
PDGFBP01127 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC28.25■■■□□ 2.11
PDGFBP01127 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PDGFBP01127 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PDGFBP01127 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
PDGFBP01127 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28.22■■■□□ 2.11
PDGFBP01127 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PDGFBP01127 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC28.22■■■□□ 2.11
PDGFBP01127 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.22■■■□□ 2.11
PDGFBP01127 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
PDGFBP01127 BRD4-212ENST00000630599 726 ntTSL 2 BASIC28.2■■■□□ 2.1
PDGFBP01127 MACF1-219ENST00000484793 834 ntTSL 2 BASIC28.19■■■□□ 2.1
PDGFBP01127 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
PDGFBP01127 CALM3-209ENST00000597743 577 ntTSL 4 BASIC28.18■■■□□ 2.1
PDGFBP01127 AC021231.2-201ENST00000594613 730 ntBASIC28.16■■■□□ 2.1
PDGFBP01127 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PDGFBP01127 RPS2-209ENST00000529806 993 ntTSL 3 BASIC28.15■■■□□ 2.1
PDGFBP01127 AC016575.1-201ENST00000607026 382 ntBASIC28.15■■■□□ 2.1
PDGFBP01127 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.14■■■□□ 2.1
PDGFBP01127 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
PDGFBP01127 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.14■■■□□ 2.1
PDGFBP01127 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PDGFBP01127 RNF166-209ENST00000567844 633 ntTSL 5 BASIC28.11■■■□□ 2.09
PDGFBP01127 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC28.11■■■□□ 2.09
PDGFBP01127 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PDGFBP01127 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC28.1■■■□□ 2.09
PDGFBP01127 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
PDGFBP01127 MIR3648-2-201ENST00000581792 180 ntBASIC28.1■■■□□ 2.09
PDGFBP01127 MIR3648-1-201ENST00000615959 180 ntBASIC28.1■■■□□ 2.09
PDGFBP01127 GDI1-215ENST00000630693 786 ntTSL 4 BASIC28.08■■■□□ 2.09
PDGFBP01127 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC28.08■■■□□ 2.09
PDGFBP01127 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.08
PDGFBP01127 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC28.07■■■□□ 2.08
PDGFBP01127 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC28.06■■■□□ 2.08
PDGFBP01127 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PDGFBP01127 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
PDGFBP01127 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
PDGFBP01127 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC28.03■■■□□ 2.08
PDGFBP01127 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
PDGFBP01127 WASH5P-204ENST00000632292 975 ntBASIC28.02■■■□□ 2.08
PDGFBP01127 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC28.01■■■□□ 2.08
PDGFBP01127 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
PDGFBP01127 ABHD17AP3-201ENST00000503096 1137 ntBASIC27.99■■■□□ 2.07
PDGFBP01127 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
PDGFBP01127 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC27.98■■■□□ 2.07
PDGFBP01127 CIB2-204ENST00000557846 934 ntTSL 3 BASIC27.98■■■□□ 2.07
PDGFBP01127 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
PDGFBP01127 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
PDGFBP01127 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
PDGFBP01127 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.96■■■□□ 2.07
PDGFBP01127 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
PDGFBP01127 CR559946.2-201ENST00000623684 991 ntBASIC27.95■■■□□ 2.06
PDGFBP01127 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27.93■■■□□ 2.06
PDGFBP01127 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
PDGFBP01127 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
PDGFBP01127 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PDGFBP01127 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
PDGFBP01127 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
PDGFBP01127 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
PDGFBP01127 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC27.89■■■□□ 2.06
PDGFBP01127 DUX4L11-201ENST00000611504 1267 ntBASIC27.89■■■□□ 2.06
PDGFBP01127 DUX4L12-201ENST00000614593 1267 ntBASIC27.89■■■□□ 2.06
PDGFBP01127 DUX4L14-201ENST00000621227 1267 ntBASIC27.89■■■□□ 2.06
PDGFBP01127 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC27.86■■■□□ 2.05
PDGFBP01127 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
PDGFBP01127 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.85■■■□□ 2.05
PDGFBP01127 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC27.85■■■□□ 2.05
PDGFBP01127 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC27.85■■■□□ 2.05
PDGFBP01127 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC27.85■■■□□ 2.05
PDGFBP01127 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
PDGFBP01127 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC27.84■■■□□ 2.05
PDGFBP01127 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
PDGFBP01127 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC27.84■■■□□ 2.05
PDGFBP01127 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC27.84■■■□□ 2.05
PDGFBP01127 MIR6090-201ENST00000622481 60 ntBASIC27.84■■■□□ 2.05
PDGFBP01127 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC27.82■■■□□ 2.04
PDGFBP01127 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC27.82■■■□□ 2.04
PDGFBP01127 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC27.81■■■□□ 2.04
PDGFBP01127 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.81■■■□□ 2.04
PDGFBP01127 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
PDGFBP01127 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC27.8■■■□□ 2.04
PDGFBP01127 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC27.78■■■□□ 2.04
PDGFBP01127 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
PDGFBP01127 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
PDGFBP01127 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
PDGFBP01127 LINC01971-201ENST00000617888 1048 ntBASIC27.78■■■□□ 2.04
PDGFBP01127 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC27.77■■■□□ 2.04
PDGFBP01127 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC27.77■■■□□ 2.04
PDGFBP01127 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC27.76■■■□□ 2.03
PDGFBP01127 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.75■■■□□ 2.03
PDGFBP01127 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
PDGFBP01127 AC108673.1-201ENST00000510422 1159 ntBASIC27.73■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms