Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC35.51■■■■□ 3.28
PTCD1O75127 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC35.51■■■■□ 3.27
PTCD1O75127 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC35.5■■■■□ 3.27
PTCD1O75127 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC35.49■■■■□ 3.27
PTCD1O75127 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC35.49■■■■□ 3.27
PTCD1O75127 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
PTCD1O75127 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC35.46■■■■□ 3.27
PTCD1O75127 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
PTCD1O75127 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC35.41■■■■□ 3.26
PTCD1O75127 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
PTCD1O75127 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC35.39■■■■□ 3.26
PTCD1O75127 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
PTCD1O75127 BOD1-206ENST00000480951 814 ntTSL 2 BASIC35.38■■■■□ 3.25
PTCD1O75127 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC35.38■■■■□ 3.25
PTCD1O75127 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
PTCD1O75127 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
PTCD1O75127 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
PTCD1O75127 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC35.35■■■■□ 3.25
PTCD1O75127 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC35.35■■■■□ 3.25
PTCD1O75127 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC35.35■■■■□ 3.25
PTCD1O75127 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
PTCD1O75127 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
PTCD1O75127 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC35.34■■■■□ 3.25
PTCD1O75127 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC35.34■■■■□ 3.25
PTCD1O75127 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC35.33■■■■□ 3.25
PTCD1O75127 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
PTCD1O75127 MBP-237ENST00000579129 1052 ntTSL 5 BASIC35.32■■■■□ 3.24
PTCD1O75127 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC35.31■■■■□ 3.24
PTCD1O75127 ZNRF2P2-203ENST00000454624 420 ntBASIC35.31■■■■□ 3.24
PTCD1O75127 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
PTCD1O75127 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
PTCD1O75127 HLA-V-202ENST00000446817 847 ntBASIC35.29■■■■□ 3.24
PTCD1O75127 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC35.29■■■■□ 3.24
PTCD1O75127 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC35.27■■■■□ 3.24
PTCD1O75127 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
PTCD1O75127 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
PTCD1O75127 RPS2-209ENST00000529806 993 ntTSL 3 BASIC35.25■■■■□ 3.23
PTCD1O75127 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
PTCD1O75127 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC35.24■■■■□ 3.23
PTCD1O75127 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
PTCD1O75127 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
PTCD1O75127 HGH1-207ENST00000628266 258 ntTSL 5 BASIC35.22■■■■□ 3.23
PTCD1O75127 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC35.21■■■■□ 3.23
PTCD1O75127 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC35.21■■■■□ 3.23
PTCD1O75127 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC35.21■■■■□ 3.23
PTCD1O75127 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC35.21■■■■□ 3.23
PTCD1O75127 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC35.2■■■■□ 3.23
PTCD1O75127 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC35.2■■■■□ 3.23
PTCD1O75127 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC35.2■■■■□ 3.23
PTCD1O75127 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.22
PTCD1O75127 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC35.19■■■■□ 3.22
PTCD1O75127 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC35.19■■■■□ 3.22
PTCD1O75127 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
PTCD1O75127 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC35.18■■■■□ 3.22
PTCD1O75127 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC35.18■■■■□ 3.22
PTCD1O75127 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
PTCD1O75127 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC35.18■■■■□ 3.22
PTCD1O75127 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
PTCD1O75127 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC35.17■■■■□ 3.22
PTCD1O75127 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC35.15■■■■□ 3.22
PTCD1O75127 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC35.14■■■■□ 3.22
PTCD1O75127 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC35.14■■■■□ 3.22
PTCD1O75127 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC35.13■■■■□ 3.21
PTCD1O75127 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC35.12■■■■□ 3.21
PTCD1O75127 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
PTCD1O75127 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC35.12■■■■□ 3.21
PTCD1O75127 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
PTCD1O75127 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC35.1■■■■□ 3.21
PTCD1O75127 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC35.09■■■■□ 3.21
PTCD1O75127 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC35.09■■■■□ 3.21
PTCD1O75127 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
PTCD1O75127 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC35.08■■■■□ 3.21
PTCD1O75127 DUX4L29-201ENST00000425409 679 ntBASIC35.07■■■■□ 3.2
PTCD1O75127 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
PTCD1O75127 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC35.06■■■■□ 3.2
PTCD1O75127 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
PTCD1O75127 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
PTCD1O75127 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
PTCD1O75127 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC35.02■■■■□ 3.2
PTCD1O75127 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC35.02■■■■□ 3.2
PTCD1O75127 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC35■■■■□ 3.19
PTCD1O75127 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
PTCD1O75127 AC021231.2-201ENST00000594613 730 ntBASIC34.98■■■■□ 3.19
PTCD1O75127 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
PTCD1O75127 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
PTCD1O75127 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC34.96■■■■□ 3.19
PTCD1O75127 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
PTCD1O75127 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC34.96■■■■□ 3.19
PTCD1O75127 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC34.95■■■■□ 3.19
PTCD1O75127 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC34.94■■■■□ 3.18
PTCD1O75127 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
PTCD1O75127 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC34.93■■■■□ 3.18
PTCD1O75127 RPS2-202ENST00000526522 924 ntTSL 2 BASIC34.93■■■■□ 3.18
PTCD1O75127 CIB2-204ENST00000557846 934 ntTSL 3 BASIC34.93■■■■□ 3.18
PTCD1O75127 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
PTCD1O75127 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC34.91■■■■□ 3.18
PTCD1O75127 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC34.91■■■■□ 3.18
PTCD1O75127 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC34.91■■■■□ 3.18
PTCD1O75127 MIR6090-201ENST00000622481 60 ntBASIC34.9■■■■□ 3.18
PTCD1O75127 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC34.9■■■■□ 3.18
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms