Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 MARCH6-202ENST00000449913 3062 ntTSL 2 BASIC10.2□□□□□ -0.782e-6■■■■■ 42.4
SF3B1O75533 MARCH6-204ENST00000503788 2874 ntTSL 2 BASIC8.84□□□□□ -0.992e-6■■■■■ 42.4
SF3B1O75533 MARCH6-210ENST00000511802 4734 ntTSL 28.2□□□□□ -1.12e-6■■■■■ 42.4
SF3B1O75533 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.282e-6■■■■■ 42.4
SF3B1O75533 AC087380.1-201ENST00000420465 1001 ntTSL 38.03□□□□□ -1.122e-6■■■■■ 42.4
SF3B1O75533 HBE1-203ENST00000396895 578 ntTSL 55.84□□□□□ -1.472e-6■■■■■ 42.4
SF3B1O75533 FAM126A-207ENST00000467005 542 ntTSL 215.09■□□□□ 0.011e-6■■■■■ 42.4
SF3B1O75533 FAM126A-201ENST00000409763 616 ntTSL 2 BASIC14.2□□□□□ -0.141e-6■■■■■ 42.4
SF3B1O75533 FAM126A-208ENST00000477349 544 ntTSL 411.09□□□□□ -0.631e-6■■■■■ 42.4
SF3B1O75533 TMEM168-204ENST00000447395 1291 ntTSL 217.92■□□□□ 0.469e-6■■■■■ 42.4
SF3B1O75533 TMEM168-203ENST00000441474 570 ntTSL 414.17□□□□□ -0.149e-6■■■■■ 42.4
SF3B1O75533 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.319e-6■■■■■ 42.4
SF3B1O75533 TMEM168-205ENST00000449743 775 ntTSL 310.46□□□□□ -0.739e-6■■■■■ 42.4
SF3B1O75533 TMEM168-206ENST00000454074 2659 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.779e-6■■■■■ 42.4
SF3B1O75533 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC8.19□□□□□ -1.12e-6■■■■■ 42.4
SF3B1O75533 CCAR1-207ENST00000536012 2447 ntTSL 1 (best)7.52□□□□□ -1.212e-6■■■■■ 42.4
SF3B1O75533 CCAR1-214ENST00000543225 2407 ntTSL 1 (best)7.01□□□□□ -1.292e-6■■■■■ 42.4
SF3B1O75533 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.342e-6■■■■■ 42.4
SF3B1O75533 CCAR1-213ENST00000541012 2432 ntTSL 1 (best)6.58□□□□□ -1.362e-6■■■■■ 42.4
SF3B1O75533 CCAR1-215ENST00000543229 2475 ntTSL 26.37□□□□□ -1.392e-6■■■■■ 42.4
SF3B1O75533 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.5□□□□□ -1.532e-6■■■■■ 42.4
SF3B1O75533 CCAR1-211ENST00000539539 3224 ntTSL 24.48□□□□□ -1.692e-6■■■■■ 42.4
SF3B1O75533 CCAR1-212ENST00000540210 3415 ntTSL 1 (best)4.26□□□□□ -1.732e-6■■■■■ 42.4
SF3B1O75533 CCAR1-203ENST00000479143 478 ntTSL 53.57□□□□□ -1.842e-6■■■■■ 42.4
SF3B1O75533 CCAR1-216ENST00000543706 869 ntTSL 53.19□□□□□ -1.92e-6■■■■■ 42.4
SF3B1O75533 PUM2-203ENST00000361078 6251 ntTSL 2 BASIC12.84□□□□□ -0.352e-6■■■■■ 42.4
SF3B1O75533 PUM2-204ENST00000403432 3594 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.532e-6■■■■■ 42.4
SF3B1O75533 PMM2-203ENST00000562318 931 ntTSL 216.22■□□□□ 0.193e-6■■■■■ 42.4
SF3B1O75533 PMM2-211ENST00000566540 1557 ntTSL 1 (best)16.13■□□□□ 0.173e-6■■■■■ 42.4
SF3B1O75533 PMM2-212ENST00000566604 986 ntTSL 215.56■□□□□ 0.083e-6■■■■■ 42.4
SF3B1O75533 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.063e-6■■■■■ 42.4
SF3B1O75533 PMM2-207ENST00000565221 793 ntTSL 1 (best)13.93□□□□□ -0.183e-6■■■■■ 42.4
SF3B1O75533 PMM2-216ENST00000569958 698 ntTSL 2 BASIC13.34□□□□□ -0.273e-6■■■■■ 42.4
SF3B1O75533 PMM2-218ENST00000570134 573 ntTSL 512.82□□□□□ -0.363e-6■■■■■ 42.4
SF3B1O75533 PMM2-214ENST00000567697 5409 ntTSL 1 (best)12.37□□□□□ -0.433e-6■■■■■ 42.4
SF3B1O75533 PMM2-213ENST00000566983 907 ntTSL 5 BASIC10.08□□□□□ -0.83e-6■■■■■ 42.4
SF3B1O75533 PMM2-217ENST00000570076 1002 ntTSL 28.49□□□□□ -1.053e-6■■■■■ 42.4
SF3B1O75533 SSX2IP-205ENST00000460500 2116 ntTSL 55.12□□□□□ -1.592e-6■■■■■ 42.3
SF3B1O75533 UGCG-203ENST00000489355 526 ntTSL 219.88■□□□□ 0.775e-6■■■■■ 42.3
SF3B1O75533 UGCG-204ENST00000490110 581 ntTSL 310.78□□□□□ -0.685e-6■■■■■ 42.3
SF3B1O75533 UGCG-205ENST00000495085 772 ntTSL 34.17□□□□□ -1.745e-6■■■■■ 42.3
SF3B1O75533 DGAT1-205ENST00000527885 605 ntTSL 315.58■□□□□ 0.084e-7■■■■■ 42.3
SF3B1O75533 DGAT1-203ENST00000524965 1336 ntTSL 514.61□□□□□ -0.074e-7■■■■■ 42.3
SF3B1O75533 DGAT1-202ENST00000524844 401 ntTSL 38.18□□□□□ -1.14e-7■■■■■ 42.3
SF3B1O75533 MARCH7-204ENST00000420397 983 ntTSL 52.71□□□□□ -1.984e-6■■■■■ 42.3
SF3B1O75533 MBNL1-210ENST00000461436 1681 ntTSL 54.49□□□□□ -1.694e-7■■■■■ 42.3
SF3B1O75533 NQO2-207ENST00000397717 833 ntTSL 518.01■□□□□ 0.475e-6■■■■■ 42.3
SF3B1O75533 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.445e-6■■■■■ 42.3
SF3B1O75533 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.69■□□□□ 0.425e-6■■■■■ 42.3
SF3B1O75533 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.155e-6■■■■■ 42.3
SF3B1O75533 NQO2-204ENST00000380454 851 ntTSL 2 BASIC14.19□□□□□ -0.145e-6■■■■■ 42.3
SF3B1O75533 NQO2-205ENST00000380455 10084 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.385e-6■■■■■ 42.3
SF3B1O75533 FANCA-212ENST00000563513 571 ntTSL 420.09■□□□□ 0.816e-8■■■■■ 42.3
SF3B1O75533 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.68□□□□□ -1.342e-6■■■■■ 42.3
SF3B1O75533 PUM2-209ENST00000440577 4352 ntTSL 1 (best)6.45□□□□□ -1.382e-6■■■■■ 42.3
SF3B1O75533 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.432e-6■■■■■ 42.3
SF3B1O75533 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.68□□□□□ -1.986e-6■■■■■ 42.3
SF3B1O75533 STK35-202ENST00000493263 1595 ntTSL 1 (best)22.1■■□□□ 1.131e-6■■■■■ 42.2
SF3B1O75533 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.21e-6■■■■■ 42.2
SF3B1O75533 ARFGEF1-207ENST00000520381 5882 ntTSL 54.67□□□□□ -1.662e-6■■■■■ 42.2
SF3B1O75533 PRKAR2B-202ENST00000393613 642 ntTSL 34.34□□□□□ -1.714e-6■■■■■ 42.2
SF3B1O75533 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.525e-8■■■■■ 42.1
SF3B1O75533 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.485e-8■■■■■ 42.1
SF3B1O75533 BAG6-257ENST00000462875 972 ntTSL 219.99■□□□□ 0.794e-6■■■■■ 42.1
SF3B1O75533 MCM3-204ENST00000476448 982 ntTSL 215.49■□□□□ 0.076e-7■■■■■ 42.1
SF3B1O75533 RPRD1A-206ENST00000588459 576 ntTSL 415.04■□□□□ -01e-12■■■■■ 42.1
SF3B1O75533 PRRC2C-212ENST00000498596 1066 ntTSL 36.98□□□□□ -1.291e-12■■■■■ 42.1
SF3B1O75533 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.69□□□□□ -1.341e-12■■■■■ 42.1
SF3B1O75533 PRRC2C-211ENST00000495585 5566 ntTSL 1 (best)5.05□□□□□ -1.61e-12■■■■■ 42.1
SF3B1O75533 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC3.77□□□□□ -1.813e-6■■■■■ 42.1
SF3B1O75533 ITCH-205ENST00000483727 1070 ntTSL 52.83□□□□□ -1.961e-12■■■■■ 42.1
SF3B1O75533 PELI1-204ENST00000494203 602 ntTSL 427.14■■□□□ 1.934e-8■■■■■ 42.1
SF3B1O75533 PELI1-202ENST00000466177 698 ntTSL 523.04■■□□□ 1.284e-8■■■■■ 42.1
SF3B1O75533 PELI1-203ENST00000468869 553 ntTSL 420.53■□□□□ 0.884e-8■■■■■ 42.1
SF3B1O75533 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.494e-8■■■■■ 42.1
SF3B1O75533 AC010327.5-201ENST00000586923 3061 ntBASIC15.13■□□□□ 0.014e-8■■■■■ 42.1
SF3B1O75533 PELI1-201ENST00000358912 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.574e-8■■■■■ 42.1
SF3B1O75533 TMBIM1-221ENST00000476429 462 ntTSL 320.41■□□□□ 0.861e-6■■■■■ 42.1
SF3B1O75533 TMBIM1-222ENST00000492966 400 ntTSL 48.19□□□□□ -1.11e-6■■■■■ 42.1
SF3B1O75533 TFDP2-204ENST00000467667 865 ntTSL 36.42□□□□□ -1.384e-6■■■■■ 42
SF3B1O75533 TFDP2-205ENST00000471095 1004 ntTSL 25.4□□□□□ -1.554e-6■■■■■ 42
SF3B1O75533 TFDP2-214ENST00000488107 416 ntTSL 54.14□□□□□ -1.754e-6■■■■■ 42
SF3B1O75533 TFDP2-210ENST00000478006 746 ntTSL 34□□□□□ -1.774e-6■■■■■ 42
SF3B1O75533 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.891e-6■■■■■ 42
SF3B1O75533 TFDP2-223ENST00000497579 878 ntTSL 33.19□□□□□ -1.94e-6■■■■■ 42
SF3B1O75533 DMXL1-212ENST00000514151 706 ntTSL 54.19□□□□□ -1.743e-12■■■■■ 42
SF3B1O75533 CDC45-209ENST00000483431 712 ntTSL 518.69■□□□□ 0.582e-6■■■■■ 42
SF3B1O75533 CDC45-206ENST00000438587 552 ntTSL 47.52□□□□□ -1.22e-6■■■■■ 42
SF3B1O75533 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.586e-6■■■■■ 42
SF3B1O75533 SASS6-202ENST00000462159 3972 ntTSL 1 (best)4.79□□□□□ -1.646e-6■■■■■ 42
SF3B1O75533 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.112e-6■■■■■ 42
SF3B1O75533 PDCD10-203ENST00000462725 715 ntTSL 520.06■□□□□ 0.82e-6■■■■■ 42
SF3B1O75533 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.752e-6■■■■■ 42
SF3B1O75533 PDCD10-208ENST00000473645 1360 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.692e-6■■■■■ 42
SF3B1O75533 PDCD10-218ENST00000497056 1276 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.92e-6■■■■■ 42
SF3B1O75533 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.692e-6■■■■■ 42
SF3B1O75533 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.14□□□□□ -1.752e-6■■■■■ 42
SF3B1O75533 PDCD10-209ENST00000475915 849 ntTSL 53.44□□□□□ -1.862e-6■■■■■ 42
SF3B1O75533 PDCD10-215ENST00000492139 686 ntTSL 53.43□□□□□ -1.862e-6■■■■■ 42
SF3B1O75533 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.63□□□□□ -1.992e-6■■■■■ 42
Retrieved 100 of 46,956 protein–RNA pairs in 547.4 ms