Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.34■□□□□ 0.69
VSX1Q9NZR4 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VSX1Q9NZR4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VSX1Q9NZR4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VSX1Q9NZR4 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
VSX1Q9NZR4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.33■□□□□ 0.69
VSX1Q9NZR4 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VSX1Q9NZR4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 AC068587.7-201ENST00000641602 218 ntBASIC19.33■□□□□ 0.68
VSX1Q9NZR4 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VSX1Q9NZR4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 AC079089.2-201ENST00000531211 1277 ntBASIC19.32■□□□□ 0.68
VSX1Q9NZR4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.32■□□□□ 0.68
VSX1Q9NZR4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VSX1Q9NZR4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 FBXW4P1-201ENST00000426721 2239 ntBASIC19.31■□□□□ 0.68
VSX1Q9NZR4 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VSX1Q9NZR4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 MIR4466-201ENST00000606121 54 ntBASIC19.3■□□□□ 0.68
VSX1Q9NZR4 AL138724.1-201ENST00000606771 1088 ntBASIC19.3■□□□□ 0.68
VSX1Q9NZR4 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VSX1Q9NZR4 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 AC010542.4-201ENST00000563151 1910 ntBASIC19.29■□□□□ 0.68
VSX1Q9NZR4 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
VSX1Q9NZR4 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms