Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 AC010542.4-201ENST00000563151 1910 ntBASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
VCX3AQ9NNX9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 AC025884.2-201ENST00000553429 711 ntBASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 AC087289.5-201ENST00000586076 3175 ntBASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
VCX3AQ9NNX9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 AL022069.1-201ENST00000568025 1636 ntBASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.19■□□□□ 0.82
VCX3AQ9NNX9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 LINC01006-201ENST00000333319 2292 ntBASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
VCX3AQ9NNX9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCX3AQ9NNX9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VCX3AQ9NNX9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms