Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP1AQ9HD42 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP1AQ9HD42 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 MIR6722-201ENST00000617286 78 ntBASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CHMP1AQ9HD42 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 FBXW4P1-201ENST00000426721 2239 ntBASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 AC080038.3-201ENST00000623346 1952 ntBASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP1AQ9HD42 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 AC139530.1-201ENST00000575312 1977 ntBASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 AC009086.3-201ENST00000623486 1008 ntBASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
CHMP1AQ9HD42 FP325331.1-202ENST00000623531 1380 ntBASIC18.52■□□□□ 0.55
CHMP1AQ9HD42 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CHMP1AQ9HD42 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CHMP1AQ9HD42 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.55
CHMP1AQ9HD42 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.52■□□□□ 0.55
CHMP1AQ9HD42 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 AIRN-201ENST00000601203 4374 ntBASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 AC021242.3-201ENST00000607598 1377 ntBASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP1AQ9HD42 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP1AQ9HD42 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP1AQ9HD42 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP1AQ9HD42 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP1AQ9HD42 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CHMP1AQ9HD42 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP1AQ9HD42 AC087742.1-201ENST00000575880 1738 ntBASIC18.5■□□□□ 0.55
CHMP1AQ9HD42 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.5■□□□□ 0.55
CHMP1AQ9HD42 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.5■□□□□ 0.55
CHMP1AQ9HD42 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CHMP1AQ9HD42 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP1AQ9HD42 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms