Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
BRF1Q92994 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
BRF1Q92994 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC25.57■■□□□ 1.68
BRF1Q92994 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
BRF1Q92994 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
BRF1Q92994 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC25.56■■□□□ 1.68
BRF1Q92994 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
BRF1Q92994 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
BRF1Q92994 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
BRF1Q92994 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
BRF1Q92994 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC25.56■■□□□ 1.68
BRF1Q92994 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
BRF1Q92994 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
BRF1Q92994 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
BRF1Q92994 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC25.56■■□□□ 1.68
BRF1Q92994 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
BRF1Q92994 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.56■■□□□ 1.68
BRF1Q92994 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.56■■□□□ 1.68
BRF1Q92994 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC25.56■■□□□ 1.68
BRF1Q92994 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
BRF1Q92994 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
BRF1Q92994 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
BRF1Q92994 CLDN5-201ENST00000403084 2357 ntBASIC25.55■■□□□ 1.68
BRF1Q92994 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
BRF1Q92994 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
BRF1Q92994 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
BRF1Q92994 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
BRF1Q92994 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
BRF1Q92994 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC25.55■■□□□ 1.68
BRF1Q92994 AC079089.2-201ENST00000531211 1277 ntBASIC25.55■■□□□ 1.68
BRF1Q92994 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.55■■□□□ 1.68
BRF1Q92994 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.55■■□□□ 1.68
BRF1Q92994 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC25.55■■□□□ 1.68
BRF1Q92994 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
BRF1Q92994 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
BRF1Q92994 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC25.55■■□□□ 1.68
BRF1Q92994 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC25.55■■□□□ 1.68
BRF1Q92994 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
BRF1Q92994 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.54■■□□□ 1.68
BRF1Q92994 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.54■■□□□ 1.68
BRF1Q92994 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
BRF1Q92994 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
BRF1Q92994 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
BRF1Q92994 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC25.54■■□□□ 1.68
BRF1Q92994 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
BRF1Q92994 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
BRF1Q92994 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
BRF1Q92994 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
BRF1Q92994 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
BRF1Q92994 AC010141.3-201ENST00000456659 717 ntBASIC25.53■■□□□ 1.68
BRF1Q92994 PBX2P1-201ENST00000493219 1291 ntBASIC25.53■■□□□ 1.68
BRF1Q92994 AC110285.6-201ENST00000617652 491 ntBASIC25.53■■□□□ 1.68
BRF1Q92994 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.53■■□□□ 1.68
BRF1Q92994 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
BRF1Q92994 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
BRF1Q92994 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
BRF1Q92994 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
BRF1Q92994 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.52■■□□□ 1.68
BRF1Q92994 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
BRF1Q92994 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.52■■□□□ 1.68
BRF1Q92994 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.52■■□□□ 1.68
BRF1Q92994 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC25.52■■□□□ 1.68
BRF1Q92994 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
BRF1Q92994 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25.52■■□□□ 1.68
BRF1Q92994 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
BRF1Q92994 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
BRF1Q92994 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
BRF1Q92994 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
BRF1Q92994 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC25.51■■□□□ 1.67
BRF1Q92994 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
BRF1Q92994 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC25.51■■□□□ 1.67
BRF1Q92994 BX842568.3-201ENST00000418104 571 ntBASIC25.51■■□□□ 1.67
BRF1Q92994 AC087239.1-201ENST00000622671 572 ntBASIC25.51■■□□□ 1.67
BRF1Q92994 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
BRF1Q92994 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
BRF1Q92994 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
BRF1Q92994 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.51■■□□□ 1.67
BRF1Q92994 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
BRF1Q92994 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
BRF1Q92994 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
BRF1Q92994 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.5■■□□□ 1.67
BRF1Q92994 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
BRF1Q92994 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC25.5■■□□□ 1.67
BRF1Q92994 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
BRF1Q92994 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.5■■□□□ 1.67
BRF1Q92994 AP005435.1-201ENST00000529293 1178 ntBASIC25.5■■□□□ 1.67
BRF1Q92994 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC25.5■■□□□ 1.67
BRF1Q92994 WWC2-AS2-201ENST00000578387 2183 ntBASIC25.49■■□□□ 1.67
BRF1Q92994 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
BRF1Q92994 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.49■■□□□ 1.67
BRF1Q92994 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.49■■□□□ 1.67
BRF1Q92994 AC106739.1-201ENST00000617035 715 ntBASIC25.49■■□□□ 1.67
BRF1Q92994 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
BRF1Q92994 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
BRF1Q92994 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
BRF1Q92994 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
BRF1Q92994 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
BRF1Q92994 OXCT2P1-201ENST00000447263 1535 ntBASIC25.48■■□□□ 1.67
BRF1Q92994 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.48■■□□□ 1.67
BRF1Q92994 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms