Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 AIG1-202ENST00000357847 1395 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.982e-7■■■■□ 19.3
LSM11P83369 AIG1-206ENST00000458219 593 ntTSL 26.04□□□□□ -1.442e-7■■■■□ 19.3
LSM11P83369 SEC31B-209ENST00000485800 2217 ntTSL 512.08□□□□□ -0.481e-6■■■□□ 19.2
LSM11P83369 SEC31B-203ENST00000469546 4396 ntTSL 59.87□□□□□ -0.831e-6■■■□□ 19.2
LSM11P83369 SEC31B-205ENST00000479697 5087 ntTSL 1 (best)9.82□□□□□ -0.841e-6■■■□□ 19.2
LSM11P83369 SEC31B-211ENST00000492667 2920 ntTSL 29.69□□□□□ -0.861e-6■■■□□ 19.2
LSM11P83369 SEC31B-201ENST00000370345 4612 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.011e-6■■■□□ 19.2
LSM11P83369 SEC31B-207ENST00000482456 3916 ntTSL 58.71□□□□□ -1.021e-6■■■□□ 19.2
LSM11P83369 SEC31B-202ENST00000462434 4849 ntTSL 58.7□□□□□ -1.021e-6■■■□□ 19.2
LSM11P83369 ARHGEF10L-204ENST00000375415 4035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.746e-7■■■□□ 19.2
LSM11P83369 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.184e-9■■■□□ 19.1
LSM11P83369 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC12.21□□□□□ -0.467e-6■■■□□ 19.1
LSM11P83369 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.467e-6■■■□□ 19.1
LSM11P83369 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC11.71□□□□□ -0.537e-6■■■□□ 19.1
LSM11P83369 CASC3-202ENST00000394114 2792 ntTSL 26.24□□□□□ -1.414e-9■■■□□ 19.1
LSM11P83369 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.153e-6■■■□□ 19.1
LSM11P83369 PIP5K1C-208ENST00000637724 435 ntTSL 317.49■□□□□ 0.393e-6■■■□□ 19.1
LSM11P83369 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.363e-6■■■□□ 19.1
LSM11P83369 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.243e-6■■■□□ 19.1
LSM11P83369 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.13e-6■■■□□ 19.1
LSM11P83369 PIP5K1C-204ENST00000587482 1311 ntTSL 514.32□□□□□ -0.123e-6■■■□□ 19.1
LSM11P83369 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.169e-7■■■□□ 19.1
LSM11P83369 RANBP1-210ENST00000435265 1879 ntTSL 217.87■□□□□ 0.459e-7■■■□□ 19.1
LSM11P83369 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.11□□□□□ -0.319e-7■■■□□ 19.1
LSM11P83369 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.349e-7■■■□□ 19.1
LSM11P83369 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.34■□□□□ 0.695e-8■■■□□ 19.1
LSM11P83369 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.564e-8■■■□□ 19.1
LSM11P83369 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.465e-8■■■□□ 19.1
LSM11P83369 TRMT2A-216ENST00000487668 1040 ntTSL 516.05■□□□□ 0.165e-8■■■□□ 19.1
LSM11P83369 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.034e-8■■■□□ 19.1
LSM11P83369 TRMT2A-206ENST00000444845 739 ntTSL 313□□□□□ -0.335e-8■■■□□ 19.1
LSM11P83369 TRMT2A-213ENST00000480339 762 ntTSL 210.75□□□□□ -0.695e-8■■■□□ 19.1
LSM11P83369 ARHGEF10L-201ENST00000167825 3018 ntTSL 212.59□□□□□ -0.395e-7■■■□□ 19.1
LSM11P83369 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.465e-7■■■□□ 19.1
LSM11P83369 ARHGEF10L-206ENST00000469726 4585 ntTSL 211.81□□□□□ -0.525e-7■■■□□ 19.1
LSM11P83369 ARHGEF10L-203ENST00000375408 3685 ntTSL 5 BASIC11.42□□□□□ -0.585e-7■■■□□ 19.1
LSM11P83369 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.755e-18■■■□□ 19
LSM11P83369 C1orf174-202ENST00000474140 3499 ntTSL 514.1□□□□□ -0.155e-18■■■□□ 19
LSM11P83369 C1orf174-203ENST00000486765 2517 ntTSL 512.81□□□□□ -0.365e-18■■■□□ 19
LSM11P83369 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.742e-6■■■□□ 19
LSM11P83369 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.592e-6■■■□□ 19
LSM11P83369 PTPRM-203ENST00000400060 5030 ntTSL 5 BASIC8.88□□□□□ -0.992e-6■■■□□ 19
LSM11P83369 PTPRM-202ENST00000400053 5292 ntAPPRIS ALT2 TSL 5 BASIC7.91□□□□□ -1.142e-6■■■□□ 19
LSM11P83369 ZNF276-209ENST00000568295 2206 ntTSL 224.09■■□□□ 1.451e-6■■■□□ 19
LSM11P83369 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.134e-9■■■□□ 19
LSM11P83369 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.321e-9■■■□□ 19
LSM11P83369 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.481e-9■■■□□ 19
LSM11P83369 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.032e-6■■■□□ 19
LSM11P83369 GNPTG-205ENST00000527168 1317 ntTSL 520.45■□□□□ 0.862e-6■■■□□ 19
LSM11P83369 GNPTG-208ENST00000529957 922 ntTSL 519.16■□□□□ 0.662e-6■■■□□ 19
LSM11P83369 GNPTG-209ENST00000534197 420 ntTSL 319.16■□□□□ 0.662e-6■■■□□ 19
LSM11P83369 GNPTG-206ENST00000527876 550 ntTSL 418.94■□□□□ 0.622e-6■■■□□ 19
LSM11P83369 GNPTG-207ENST00000529110 552 ntTSL 218.86■□□□□ 0.612e-6■■■□□ 19
LSM11P83369 GNPTG-202ENST00000526820 572 ntTSL 316.67■□□□□ 0.262e-6■■■□□ 19
LSM11P83369 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.212e-7■■■□□ 19
LSM11P83369 CYHR1-206ENST00000526887 1012 ntTSL 314.97□□□□□ -0.012e-7■■■□□ 19
LSM11P83369 CC2D1A-204ENST00000587508 1667 ntTSL 518.56■□□□□ 0.565e-7■■■□□ 19
LSM11P83369 CC2D1A-203ENST00000586955 2743 ntTSL 1 (best)15.37■□□□□ 0.055e-7■■■□□ 19
LSM11P83369 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.335e-7■■■□□ 19
LSM11P83369 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.375e-7■■■□□ 19
LSM11P83369 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.29■□□□□ 0.688e-7■■■□□ 18.9
LSM11P83369 UNKL-206ENST00000402641 669 ntTSL 316.16■□□□□ 0.188e-7■■■□□ 18.9
LSM11P83369 UNKL-214ENST00000515195 481 ntTSL 413.53□□□□□ -0.248e-7■■■□□ 18.9
LSM11P83369 UNKL-213ENST00000513783 582 ntTSL 412.59□□□□□ -0.398e-7■■■□□ 18.9
LSM11P83369 UNKL-210ENST00000508903 3430 ntAPPRIS P5 TSL 5 BASIC11.74□□□□□ -0.538e-7■■■□□ 18.9
LSM11P83369 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.118e-11■■■□□ 18.9
LSM11P83369 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.612e-6■■■□□ 18.9
LSM11P83369 RANBP1-213ENST00000486575 2177 ntTSL 220.02■□□□□ 0.81e-6■■■□□ 18.9
LSM11P83369 ASIC4-205ENST00000474489 2403 ntTSL 1 (best)16.34■□□□□ 0.211e-6■■■□□ 18.9
LSM11P83369 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.081e-6■■■□□ 18.9
LSM11P83369 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.131e-6■■■□□ 18.9
LSM11P83369 SKI-204ENST00000508416 252 ntTSL 39.34□□□□□ -0.913e-6■■■□□ 18.9
LSM11P83369 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.24■□□□□ 0.037e-8■■■□□ 18.9
LSM11P83369 TELO2-207ENST00000568240 1327 ntTSL 1 (best)14.65□□□□□ -0.063e-8■■■□□ 18.9
LSM11P83369 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.123e-8■■■□□ 18.9
LSM11P83369 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.25■□□□□ 0.035e-12■■■□□ 18.9
LSM11P83369 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC11.38□□□□□ -0.595e-12■■■□□ 18.9
LSM11P83369 FAM238C-201ENST00000638416 868 ntTSL 2 BASIC10.94□□□□□ -0.665e-12■■■□□ 18.9
LSM11P83369 FAM238C-203ENST00000640121 3620 ntTSL 1 (best) BASIC10.08□□□□□ -0.85e-12■■■□□ 18.9
LSM11P83369 FAM238C-205ENST00000640641 391 ntBASIC7.75□□□□□ -1.175e-12■■■□□ 18.9
LSM11P83369 APOL2-201ENST00000249066 2685 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.872e-8■■■□□ 18.9
LSM11P83369 APOL2-202ENST00000358502 2551 ntAPPRIS P2 TSL 1 (best) BASIC8.87□□□□□ -0.992e-8■■■□□ 18.9
LSM11P83369 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.91■□□□□ 0.465e-8■■■□□ 18.9
LSM11P83369 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.365e-8■■■□□ 18.9
LSM11P83369 KRT8-210ENST00000548998 918 ntTSL 515.94■□□□□ 0.145e-8■■■□□ 18.9
LSM11P83369 KRT8-204ENST00000546826 1165 ntTSL 515.53■□□□□ 0.085e-8■■■□□ 18.9
LSM11P83369 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.075e-8■■■□□ 18.9
LSM11P83369 FNBP4-201ENST00000263773 3972 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.617e-7■■■□□ 18.8
LSM11P83369 EEF1D-222ENST00000528519 553 ntTSL 313.89□□□□□ -0.193e-6■■■□□ 18.8
LSM11P83369 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.766e-8■■■□□ 18.8
LSM11P83369 DPP7-206ENST00000473532 1144 ntTSL 515.47■□□□□ 0.076e-8■■■□□ 18.8
LSM11P83369 DPP7-203ENST00000463619 775 ntTSL 312.52□□□□□ -0.416e-8■■■□□ 18.8
LSM11P83369 ZNF316-203ENST00000614588 939 ntTSL 318.6■□□□□ 0.575e-7■■■□□ 18.8
LSM11P83369 AGO3-207ENST00000634486 3599 ntTSL 513.82□□□□□ -0.22e-14■■■□□ 18.8
LSM11P83369 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.72□□□□□ -0.212e-14■■■□□ 18.8
LSM11P83369 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.672e-14■■■□□ 18.8
LSM11P83369 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.029e-6■■■□□ 18.8
LSM11P83369 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.851e-10■■■□□ 18.8
LSM11P83369 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.629e-6■■■□□ 18.8
LSM11P83369 SH3YL1-213ENST00000463865 1999 ntTSL 517.87■□□□□ 0.451e-10■■■□□ 18.8
Retrieved 100 of 11,495 protein–RNA pairs in 77.6 ms