Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HMGCS2P54868 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HMGCS2P54868 ABHD17AP1-201ENST00000358206 933 ntBASIC25.24■■□□□ 1.63
HMGCS2P54868 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HMGCS2P54868 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HMGCS2P54868 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC25.24■■□□□ 1.63
HMGCS2P54868 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
HMGCS2P54868 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC25.24■■□□□ 1.63
HMGCS2P54868 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HMGCS2P54868 UBE2DNL-204ENST00000602536 740 ntBASIC25.24■■□□□ 1.63
HMGCS2P54868 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HMGCS2P54868 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HMGCS2P54868 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
HMGCS2P54868 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
HMGCS2P54868 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC25.23■■□□□ 1.63
HMGCS2P54868 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
HMGCS2P54868 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
HMGCS2P54868 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
HMGCS2P54868 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
HMGCS2P54868 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
HMGCS2P54868 ANOS2P-203ENST00000472227 1816 ntBASIC25.23■■□□□ 1.63
HMGCS2P54868 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC25.22■■□□□ 1.63
HMGCS2P54868 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
HMGCS2P54868 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC25.22■■□□□ 1.63
HMGCS2P54868 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
HMGCS2P54868 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
HMGCS2P54868 PARP1-202ENST00000366792 553 ntTSL 3 BASIC25.22■■□□□ 1.63
HMGCS2P54868 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC25.22■■□□□ 1.63
HMGCS2P54868 DUX4L16-201ENST00000555130 1264 ntBASIC25.22■■□□□ 1.63
HMGCS2P54868 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC25.22■■□□□ 1.63
HMGCS2P54868 GAMT-205ENST00000640762 751 ntTSL 5 BASIC25.22■■□□□ 1.63
HMGCS2P54868 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
HMGCS2P54868 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
HMGCS2P54868 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.22■■□□□ 1.63
HMGCS2P54868 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
HMGCS2P54868 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HMGCS2P54868 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HMGCS2P54868 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
HMGCS2P54868 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
HMGCS2P54868 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
HMGCS2P54868 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC25.21■■□□□ 1.63
HMGCS2P54868 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC25.21■■□□□ 1.63
HMGCS2P54868 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC25.21■■□□□ 1.63
HMGCS2P54868 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC25.21■■□□□ 1.63
HMGCS2P54868 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HMGCS2P54868 DUSP8P5-201ENST00000422884 1815 ntBASIC25.21■■□□□ 1.63
HMGCS2P54868 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
HMGCS2P54868 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
HMGCS2P54868 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC25.2■■□□□ 1.62
HMGCS2P54868 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
HMGCS2P54868 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
HMGCS2P54868 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC25.2■■□□□ 1.62
HMGCS2P54868 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC25.2■■□□□ 1.62
HMGCS2P54868 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
HMGCS2P54868 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
HMGCS2P54868 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC25.19■■□□□ 1.62
HMGCS2P54868 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
HMGCS2P54868 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC25.19■■□□□ 1.62
HMGCS2P54868 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
HMGCS2P54868 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC25.19■■□□□ 1.62
HMGCS2P54868 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
HMGCS2P54868 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
HMGCS2P54868 MFF-207ENST00000409565 1548 ntTSL 2 BASIC25.18■■□□□ 1.62
HMGCS2P54868 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC25.18■■□□□ 1.62
HMGCS2P54868 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC25.18■■□□□ 1.62
HMGCS2P54868 AC083906.2-201ENST00000511578 360 ntBASIC25.18■■□□□ 1.62
HMGCS2P54868 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
HMGCS2P54868 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC25.18■■□□□ 1.62
HMGCS2P54868 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC25.18■■□□□ 1.62
HMGCS2P54868 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
HMGCS2P54868 AP001160.3-201ENST00000601484 763 ntBASIC25.18■■□□□ 1.62
HMGCS2P54868 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC25.18■■□□□ 1.62
HMGCS2P54868 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC25.18■■□□□ 1.62
HMGCS2P54868 AL121832.2-201ENST00000610979 668 ntBASIC25.18■■□□□ 1.62
HMGCS2P54868 AC231657.2-201ENST00000624556 255 ntBASIC25.18■■□□□ 1.62
HMGCS2P54868 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
HMGCS2P54868 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
HMGCS2P54868 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
HMGCS2P54868 AC055733.4-201ENST00000638462 1354 ntBASIC25.18■■□□□ 1.62
HMGCS2P54868 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGCS2P54868 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGCS2P54868 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
HMGCS2P54868 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
HMGCS2P54868 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
HMGCS2P54868 AC007322.1-201ENST00000426983 750 ntBASIC25.17■■□□□ 1.62
HMGCS2P54868 APTR-205ENST00000447009 902 ntTSL 2 BASIC25.17■■□□□ 1.62
HMGCS2P54868 AC142086.2-201ENST00000569753 217 ntBASIC25.17■■□□□ 1.62
HMGCS2P54868 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
HMGCS2P54868 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC25.17■■□□□ 1.62
HMGCS2P54868 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGCS2P54868 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25.17■■□□□ 1.62
HMGCS2P54868 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGCS2P54868 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGCS2P54868 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
HMGCS2P54868 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGCS2P54868 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGCS2P54868 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
HMGCS2P54868 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC25.16■■□□□ 1.62
HMGCS2P54868 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
HMGCS2P54868 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms