Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL4A2P08572 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.17■■□□□ 1.14
COL4A2P08572 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC22.17■■□□□ 1.14
COL4A2P08572 AC010141.2-201ENST00000452426 721 ntBASIC22.17■■□□□ 1.14
COL4A2P08572 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.17■■□□□ 1.14
COL4A2P08572 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.17■■□□□ 1.14
COL4A2P08572 AC066615.1-201ENST00000640911 628 ntBASIC22.17■■□□□ 1.14
COL4A2P08572 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL4A2P08572 DUSP8P5-201ENST00000422884 1815 ntBASIC22.16■■□□□ 1.14
COL4A2P08572 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
COL4A2P08572 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.16■■□□□ 1.14
COL4A2P08572 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL4A2P08572 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
COL4A2P08572 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL4A2P08572 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL4A2P08572 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.16■■□□□ 1.14
COL4A2P08572 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
COL4A2P08572 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC22.16■■□□□ 1.14
COL4A2P08572 AC007322.1-201ENST00000426983 750 ntBASIC22.16■■□□□ 1.14
COL4A2P08572 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC22.16■■□□□ 1.14
COL4A2P08572 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
COL4A2P08572 TMEM191A-211ENST00000637163 1067 ntBASIC22.16■■□□□ 1.14
COL4A2P08572 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
COL4A2P08572 AC055733.4-201ENST00000638462 1354 ntBASIC22.16■■□□□ 1.14
COL4A2P08572 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.16■■□□□ 1.14
COL4A2P08572 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL4A2P08572 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.16■■□□□ 1.14
COL4A2P08572 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.15■■□□□ 1.14
COL4A2P08572 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC22.15■■□□□ 1.14
COL4A2P08572 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.15■■□□□ 1.14
COL4A2P08572 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL4A2P08572 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL4A2P08572 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
COL4A2P08572 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.15■■□□□ 1.14
COL4A2P08572 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.15■■□□□ 1.14
COL4A2P08572 SLC29A4P1-201ENST00000398760 971 ntBASIC22.14■■□□□ 1.14
COL4A2P08572 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.14
COL4A2P08572 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC22.14■■□□□ 1.14
COL4A2P08572 TSPY20P-201ENST00000450910 630 ntBASIC22.14■■□□□ 1.14
COL4A2P08572 BRI3-207ENST00000539286 699 ntTSL 2 BASIC22.14■■□□□ 1.14
COL4A2P08572 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC22.14■■□□□ 1.14
COL4A2P08572 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL4A2P08572 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL4A2P08572 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL4A2P08572 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
COL4A2P08572 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
COL4A2P08572 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
COL4A2P08572 CYP2T1P-201ENST00000432607 1285 ntBASIC22.14■■□□□ 1.13
COL4A2P08572 SERP1-208ENST00000491660 830 ntTSL 2 BASIC22.14■■□□□ 1.13
COL4A2P08572 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC22.14■■□□□ 1.13
COL4A2P08572 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
COL4A2P08572 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC22.13■■□□□ 1.13
COL4A2P08572 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
COL4A2P08572 APTR-203ENST00000430801 583 ntTSL 5 BASIC22.13■■□□□ 1.13
COL4A2P08572 AC083906.2-201ENST00000511578 360 ntBASIC22.13■■□□□ 1.13
COL4A2P08572 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC22.13■■□□□ 1.13
COL4A2P08572 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
COL4A2P08572 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC22.13■■□□□ 1.13
COL4A2P08572 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL4A2P08572 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.12■■□□□ 1.13
COL4A2P08572 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A2P08572 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
COL4A2P08572 AC138907.5-202ENST00000569484 235 ntBASIC22.12■■□□□ 1.13
COL4A2P08572 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A2P08572 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A2P08572 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A2P08572 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL4A2P08572 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC22.11■■□□□ 1.13
COL4A2P08572 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
COL4A2P08572 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL4A2P08572 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.11■■□□□ 1.13
COL4A2P08572 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL4A2P08572 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL4A2P08572 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC22.11■■□□□ 1.13
COL4A2P08572 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC22.11■■□□□ 1.13
COL4A2P08572 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
COL4A2P08572 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
COL4A2P08572 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
COL4A2P08572 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A2P08572 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
COL4A2P08572 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC22.1■■□□□ 1.13
COL4A2P08572 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A2P08572 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A2P08572 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A2P08572 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A2P08572 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A2P08572 AF201337.1-201ENST00000520239 748 ntBASIC22.1■■□□□ 1.13
COL4A2P08572 KRT18P20-201ENST00000548986 1279 ntBASIC22.1■■□□□ 1.13
COL4A2P08572 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC22.1■■□□□ 1.13
COL4A2P08572 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.1■■□□□ 1.13
COL4A2P08572 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
COL4A2P08572 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL4A2P08572 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL4A2P08572 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL4A2P08572 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
COL4A2P08572 AC010536.3-201ENST00000620306 533 ntBASIC22.09■■□□□ 1.13
COL4A2P08572 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL4A2P08572 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.09■■□□□ 1.13
COL4A2P08572 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL4A2P08572 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms