Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
NKX2-4Q9H2Z4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 MIPEPP3-201ENST00000412105 444 ntBASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 AL596275.1-201ENST00000423464 877 ntBASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 AC010536.3-201ENST00000620306 533 ntBASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 AL121749.1-202ENST00000609313 2153 ntBASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
NKX2-4Q9H2Z4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 RARRES2P4-201ENST00000514074 484 ntBASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
NKX2-4Q9H2Z4 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 AC009237.3-201ENST00000393279 1427 ntBASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 GCSHP5-201ENST00000443090 522 ntBASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 SERP1-208ENST00000491660 830 ntTSL 2 BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
NKX2-4Q9H2Z4 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.36■■□□□ 1.33
NKX2-4Q9H2Z4 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-4Q9H2Z4 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.36■■□□□ 1.33
NKX2-4Q9H2Z4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
NKX2-4Q9H2Z4 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-4Q9H2Z4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.36■■□□□ 1.33
NKX2-4Q9H2Z4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NKX2-4Q9H2Z4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-4Q9H2Z4 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
NKX2-4Q9H2Z4 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-4Q9H2Z4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.35■■□□□ 1.33
NKX2-4Q9H2Z4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.35■■□□□ 1.33
NKX2-4Q9H2Z4 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
NKX2-4Q9H2Z4 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
NKX2-4Q9H2Z4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.35■■□□□ 1.33
NKX2-4Q9H2Z4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 MKRN4P-201ENST00000444706 1521 ntBASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 AC145676.1-201ENST00000514988 2004 ntBASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
NKX2-4Q9H2Z4 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NKX2-4Q9H2Z4 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NKX2-4Q9H2Z4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.33■■□□□ 1.33
NKX2-4Q9H2Z4 AL158047.1-201ENST00000445918 881 ntBASIC23.33■■□□□ 1.33
NKX2-4Q9H2Z4 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
NKX2-4Q9H2Z4 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.33■■□□□ 1.32
NKX2-4Q9H2Z4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 MFF-207ENST00000409565 1548 ntTSL 2 BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 PXK-203ENST00000383715 1756 ntTSL 5 BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-4Q9H2Z4 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.31■■□□□ 1.32
NKX2-4Q9H2Z4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC23.31■■□□□ 1.32
NKX2-4Q9H2Z4 ESRRAP1-201ENST00000400596 1257 ntBASIC23.31■■□□□ 1.32
NKX2-4Q9H2Z4 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
NKX2-4Q9H2Z4 CYP2T1P-201ENST00000432607 1285 ntBASIC23.31■■□□□ 1.32
NKX2-4Q9H2Z4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC23.31■■□□□ 1.32
NKX2-4Q9H2Z4 RPS2P4-201ENST00000476944 856 ntBASIC23.31■■□□□ 1.32
NKX2-4Q9H2Z4 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.31■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms