Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.63■□□□□ 0.73
ZNF404Q494X3 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF404Q494X3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ZNF404Q494X3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF404Q494X3 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF404Q494X3 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF404Q494X3 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF404Q494X3 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF404Q494X3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
ZNF404Q494X3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF404Q494X3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF404Q494X3 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF404Q494X3 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF404Q494X3 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF404Q494X3 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.62■□□□□ 0.73
ZNF404Q494X3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF404Q494X3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF404Q494X3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF404Q494X3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF404Q494X3 AL157384.1-201ENST00000445995 2473 ntBASIC19.62■□□□□ 0.73
ZNF404Q494X3 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF404Q494X3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.62■□□□□ 0.73
ZNF404Q494X3 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
ZNF404Q494X3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF404Q494X3 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF404Q494X3 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF404Q494X3 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF404Q494X3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF404Q494X3 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.61■□□□□ 0.73
ZNF404Q494X3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.61■□□□□ 0.73
ZNF404Q494X3 AC090877.2-201ENST00000558441 1738 ntBASIC19.61■□□□□ 0.73
ZNF404Q494X3 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF404Q494X3 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF404Q494X3 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.61■□□□□ 0.73
ZNF404Q494X3 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF404Q494X3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.6■□□□□ 0.73
ZNF404Q494X3 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF404Q494X3 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF404Q494X3 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
ZNF404Q494X3 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.6■□□□□ 0.73
ZNF404Q494X3 RNF146-205ENST00000477776 762 ntTSL 3 BASIC19.6■□□□□ 0.73
ZNF404Q494X3 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF404Q494X3 MIR4281-201ENST00000580852 62 ntBASIC19.6■□□□□ 0.73
ZNF404Q494X3 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
ZNF404Q494X3 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF404Q494X3 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ZNF404Q494X3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.6■□□□□ 0.73
ZNF404Q494X3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
ZNF404Q494X3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
ZNF404Q494X3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF404Q494X3 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF404Q494X3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF404Q494X3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF404Q494X3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
ZNF404Q494X3 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF404Q494X3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
ZNF404Q494X3 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF404Q494X3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.59■□□□□ 0.73
ZNF404Q494X3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.59■□□□□ 0.73
ZNF404Q494X3 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ZNF404Q494X3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
ZNF404Q494X3 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.59■□□□□ 0.73
ZNF404Q494X3 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.73
ZNF404Q494X3 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF404Q494X3 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.58■□□□□ 0.73
ZNF404Q494X3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF404Q494X3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF404Q494X3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.58■□□□□ 0.73
ZNF404Q494X3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF404Q494X3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF404Q494X3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
ZNF404Q494X3 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
ZNF404Q494X3 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF404Q494X3 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ZNF404Q494X3 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
ZNF404Q494X3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
ZNF404Q494X3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF404Q494X3 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
ZNF404Q494X3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
ZNF404Q494X3 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ZNF404Q494X3 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF404Q494X3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF404Q494X3 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF404Q494X3 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF404Q494X3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF404Q494X3 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.57■□□□□ 0.72
ZNF404Q494X3 Z92544.1-202ENST00000571933 1220 ntBASIC19.57■□□□□ 0.72
ZNF404Q494X3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.57■□□□□ 0.72
ZNF404Q494X3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF404Q494X3 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.57■□□□□ 0.72
ZNF404Q494X3 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF404Q494X3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF404Q494X3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF404Q494X3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
ZNF404Q494X3 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF404Q494X3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
ZNF404Q494X3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF404Q494X3 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF404Q494X3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ZNF404Q494X3 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms