Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.292e-7■■■■□ 19.4
LSM11P83369 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC12.21□□□□□ -0.462e-7■■■■□ 19.4
LSM11P83369 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.1■□□□□ 0.492e-6■■■■□ 19.4
LSM11P83369 TCF25-207ENST00000562256 1879 ntTSL 1 (best)17.18■□□□□ 0.342e-6■■■■□ 19.4
LSM11P83369 TCF25-226ENST00000640279 2688 ntTSL 515.08■□□□□ 02e-6■■■■□ 19.4
LSM11P83369 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.92□□□□□ -0.022e-6■■■■□ 19.4
LSM11P83369 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.042e-6■■■■□ 19.4
LSM11P83369 TCF25-224ENST00000570116 1947 ntTSL 514.51□□□□□ -0.092e-6■■■■□ 19.4
LSM11P83369 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.6■□□□□ 0.092e-19■■■■□ 19.4
LSM11P83369 HIST1H2BN-202ENST00000449538 715 ntTSL 1 (best)15.24■□□□□ 0.032e-19■■■■□ 19.4
LSM11P83369 HIST1H2BN-201ENST00000396980 432 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.682e-19■■■■□ 19.4
LSM11P83369 HIST1H2BN-203ENST00000606613 4137 ntTSL 1 (best) BASIC7.28□□□□□ -1.242e-19■■■■□ 19.4
LSM11P83369 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.696e-6■■■■□ 19.4
LSM11P83369 SHC2-203ENST00000588376 1551 ntTSL 1 (best)14.45□□□□□ -0.16e-6■■■■□ 19.4
LSM11P83369 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.72■□□□□ 0.911e-8■■■■□ 19.4
LSM11P83369 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.5■□□□□ 0.875e-6■■■■□ 19.4
LSM11P83369 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.05■□□□□ 0.85e-6■■■■□ 19.4
LSM11P83369 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.35■□□□□ 0.695e-6■■■■□ 19.4
LSM11P83369 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.655e-6■■■■□ 19.4
LSM11P83369 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.555e-6■■■■□ 19.4
LSM11P83369 PNCK-231ENST00000488994 1437 ntTSL 216.75■□□□□ 0.271e-8■■■■□ 19.4
LSM11P83369 SHANK3-202ENST00000414786 7394 ntTSL 516.72■□□□□ 0.273e-11■■■■□ 19.4
LSM11P83369 PCED1A-204ENST00000448755 1170 ntTSL 316.16■□□□□ 0.186e-8■■■■□ 19.4
LSM11P83369 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.085e-6■■■■□ 19.4
LSM11P83369 NAE1-207ENST00000562428 473 ntTSL 515.49■□□□□ 0.075e-6■■■■□ 19.4
LSM11P83369 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.23■□□□□ 0.035e-6■■■■□ 19.4
LSM11P83369 YBX3-210ENST00000540975 677 ntTSL 314.96□□□□□ -0.015e-6■■■■□ 19.4
LSM11P83369 CYP4F12-205ENST00000518629 1915 ntTSL 214.87□□□□□ -0.038e-8■■■■□ 19.4
LSM11P83369 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14□□□□□ -0.173e-11■■■■□ 19.4
LSM11P83369 PCED1A-203ENST00000439542 1187 ntTSL 213.84□□□□□ -0.196e-8■■■■□ 19.4
LSM11P83369 ANAPC7-211ENST00000552087 910 ntTSL 513.37□□□□□ -0.275e-6■■■■□ 19.4
LSM11P83369 CYP4F12-216ENST00000550627 2264 ntTSL 213.3□□□□□ -0.288e-8■■■■□ 19.4
LSM11P83369 ANAPC7-203ENST00000455511 3045 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.435e-6■■■■□ 19.4
LSM11P83369 CYP4F12-201ENST00000324632 1687 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.498e-8■■■■□ 19.4
LSM11P83369 CYP4F12-215ENST00000550308 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.538e-8■■■■□ 19.4
LSM11P83369 NAE1-210ENST00000563221 532 ntTSL 211.71□□□□□ -0.535e-6■■■■□ 19.4
LSM11P83369 NAE1-219ENST00000568672 523 ntTSL 211.71□□□□□ -0.535e-6■■■■□ 19.4
LSM11P83369 NAE1-216ENST00000566663 576 ntTSL 311.58□□□□□ -0.565e-6■■■■□ 19.4
LSM11P83369 ANAPC7-206ENST00000481473 1836 ntTSL 1 (best)11.51□□□□□ -0.575e-6■■■■□ 19.4
LSM11P83369 CYP4F12-204ENST00000517734 2860 ntTSL 210.37□□□□□ -0.758e-8■■■■□ 19.4
LSM11P83369 CYP4F12-206ENST00000546608 3256 ntTSL 28.66□□□□□ -1.028e-8■■■■□ 19.4
LSM11P83369 INSR-202ENST00000341500 8954 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.045e-6■■■■□ 19.4
LSM11P83369 NAE1-206ENST00000562074 571 ntTSL 27.44□□□□□ -1.225e-6■■■■□ 19.4
LSM11P83369 TRMT2A-205ENST00000444256 426 ntTSL 513.62□□□□□ -0.235e-10■■■■□ 19.4
LSM11P83369 TRMT2A-215ENST00000487378 654 ntTSL 212.96□□□□□ -0.335e-10■■■■□ 19.4
LSM11P83369 FADS1-208ENST00000473263 574 ntTSL 418.2■□□□□ 0.52e-6■■■■□ 19.3
LSM11P83369 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.28■□□□□ 0.362e-6■■■■□ 19.3
LSM11P83369 FADS1-218ENST00000544696 567 ntTSL 316.52■□□□□ 0.242e-6■■■■□ 19.3
LSM11P83369 FADS1-207ENST00000466716 640 ntTSL 513.41□□□□□ -0.262e-6■■■■□ 19.3
LSM11P83369 FADS1-214ENST00000540767 742 ntTSL 311.35□□□□□ -0.592e-6■■■■□ 19.3
LSM11P83369 RANBP1-207ENST00000423859 832 ntTSL 316■□□□□ 0.151e-6■■■■□ 19.3
LSM11P83369 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.55e-8■■■■□ 19.3
LSM11P83369 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.33■■□□□ 1.175e-8■■■■□ 19.3
LSM11P83369 CHST11-203ENST00000547956 936 ntTSL 2 BASIC22.2■■□□□ 1.145e-8■■■■□ 19.3
LSM11P83369 PDIA5-207ENST00000489923 1651 ntTSL 1 (best)21.34■■□□□ 1.015e-8■■■■□ 19.3
LSM11P83369 PDIA5-205ENST00000484644 667 ntTSL 521.09■□□□□ 0.975e-8■■■■□ 19.3
LSM11P83369 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.845e-8■■■■□ 19.3
LSM11P83369 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.785e-8■■■■□ 19.3
LSM11P83369 HPCAL1-205ENST00000423674 586 ntTSL 419.73■□□□□ 0.755e-8■■■■□ 19.3
LSM11P83369 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.54■□□□□ 0.725e-8■■■■□ 19.3
LSM11P83369 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.695e-8■■■■□ 19.3
LSM11P83369 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.675e-8■■■■□ 19.3
LSM11P83369 BNIP3-204ENST00000633835 1062 ntTSL 318.25■□□□□ 0.515e-8■■■■□ 19.3
LSM11P83369 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.35e-8■■■■□ 19.3
LSM11P83369 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.272e-11■■■■□ 19.3
LSM11P83369 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.25e-8■■■■□ 19.3
LSM11P83369 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.025e-8■■■■□ 19.3
LSM11P83369 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.015e-8■■■■□ 19.3
LSM11P83369 AC021097.1-201ENST00000607902 574 ntBASIC14.89□□□□□ -0.035e-8■■■■□ 19.3
LSM11P83369 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.095e-8■■■■□ 19.3
LSM11P83369 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.235e-8■■■■□ 19.3
LSM11P83369 GK5-212ENST00000492097 3049 ntTSL 1 (best)13.36□□□□□ -0.275e-8■■■■□ 19.3
LSM11P83369 BNIP3-203ENST00000631806 752 ntTSL 213.19□□□□□ -0.35e-8■■■■□ 19.3
LSM11P83369 GK5-208ENST00000480757 4479 ntTSL 1 (best)12.86□□□□□ -0.355e-8■■■■□ 19.3
LSM11P83369 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC12.85□□□□□ -0.355e-8■■■■□ 19.3
LSM11P83369 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC12.55□□□□□ -0.42e-11■■■■□ 19.3
LSM11P83369 MRRF-204ENST00000373724 884 ntTSL 512.55□□□□□ -0.42e-11■■■■□ 19.3
LSM11P83369 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC12.45□□□□□ -0.422e-11■■■■□ 19.3
LSM11P83369 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC12.41□□□□□ -0.422e-11■■■■□ 19.3
LSM11P83369 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.495e-8■■■■□ 19.3
LSM11P83369 HPCAL1-203ENST00000419810 4781 ntTSL 1 (best)11.98□□□□□ -0.495e-8■■■■□ 19.3
LSM11P83369 MRRF-211ENST00000470366 1186 ntTSL 511.88□□□□□ -0.512e-11■■■■□ 19.3
LSM11P83369 MRRF-207ENST00000373729 870 ntTSL 3 BASIC11.84□□□□□ -0.512e-11■■■■□ 19.3
LSM11P83369 TAB2-206ENST00000606202 648 ntTSL 411.77□□□□□ -0.532e-11■■■■□ 19.3
LSM11P83369 WDSUB1-204ENST00000409124 1600 ntTSL 5 BASIC11.28□□□□□ -0.65e-8■■■■□ 19.3
LSM11P83369 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC11.14□□□□□ -0.632e-11■■■■□ 19.3
LSM11P83369 MRRF-206ENST00000373728 1349 ntTSL 211.09□□□□□ -0.632e-11■■■■□ 19.3
LSM11P83369 MRRF-212ENST00000489572 1599 ntTSL 1 (best)10.65□□□□□ -0.72e-11■■■■□ 19.3
LSM11P83369 TAB2-207ENST00000606797 677 ntTSL 510.48□□□□□ -0.732e-11■■■■□ 19.3
LSM11P83369 PDIA5-208ENST00000495004 563 ntTSL 39.01□□□□□ -0.975e-8■■■■□ 19.3
LSM11P83369 MRRF-210ENST00000467864 867 ntTSL 58.99□□□□□ -0.972e-11■■■■□ 19.3
LSM11P83369 GK5-201ENST00000392993 9837 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.985e-8■■■■□ 19.3
LSM11P83369 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.162e-11■■■■□ 19.3
LSM11P83369 TAB2-203ENST00000470466 4199 ntTSL 1 (best)5.96□□□□□ -1.462e-11■■■■□ 19.3
LSM11P83369 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.992e-11■■■■□ 19.3
LSM11P83369 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.032e-11■■■■□ 19.3
LSM11P83369 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.211e-8■■■■□ 19.3
LSM11P83369 AIG1-204ENST00000367601 727 ntTSL 511.1□□□□□ -0.632e-7■■■■□ 19.3
LSM11P83369 AIG1-201ENST00000275235 1202 ntTSL 2 BASIC10.95□□□□□ -0.662e-7■■■■□ 19.3
LSM11P83369 AIG1-205ENST00000447498 444 ntTSL 510.51□□□□□ -0.732e-7■■■■□ 19.3
Retrieved 100 of 11,495 protein–RNA pairs in 72.2 ms