Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX1P47902 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDX1P47902 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.59■□□□□ 0.41
CDX1P47902 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX1P47902 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC17.59■□□□□ 0.41
CDX1P47902 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX1P47902 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDX1P47902 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDX1P47902 AC009102.2-201ENST00000606772 1639 ntBASIC17.58■□□□□ 0.41
CDX1P47902 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC17.58■□□□□ 0.41
CDX1P47902 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CDX1P47902 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 AC110285.6-201ENST00000617652 491 ntBASIC17.58■□□□□ 0.4
CDX1P47902 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CDX1P47902 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX1P47902 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX1P47902 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 EI24-204ENST00000527235 1625 ntTSL 5 BASIC17.58■□□□□ 0.4
CDX1P47902 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CDX1P47902 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CDX1P47902 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CDX1P47902 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CDX1P47902 AC019069.1-201ENST00000610008 1333 ntBASIC17.57■□□□□ 0.4
CDX1P47902 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 AC133561.4-201ENST00000566112 224 ntBASIC17.57■□□□□ 0.4
CDX1P47902 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CDX1P47902 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.57■□□□□ 0.4
CDX1P47902 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX1P47902 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CDX1P47902 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CDX1P47902 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 MIR638-201ENST00000385237 100 ntBASIC17.56■□□□□ 0.4
CDX1P47902 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CDX1P47902 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 AC007952.6-201ENST00000573168 2673 ntBASIC17.56■□□□□ 0.4
CDX1P47902 AC003957.1-201ENST00000625108 2673 ntBASIC17.56■□□□□ 0.4
CDX1P47902 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC17.56■□□□□ 0.4
CDX1P47902 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.56■□□□□ 0.4
CDX1P47902 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.56■□□□□ 0.4
CDX1P47902 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CDX1P47902 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CDX1P47902 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
CDX1P47902 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.56■□□□□ 0.4
CDX1P47902 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDX1P47902 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDX1P47902 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC17.55■□□□□ 0.4
CDX1P47902 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CDX1P47902 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.55■□□□□ 0.4
CDX1P47902 USF2-207ENST00000595068 1612 ntTSL 5 BASIC17.55■□□□□ 0.4
CDX1P47902 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDX1P47902 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.55■□□□□ 0.4
CDX1P47902 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDX1P47902 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC17.55■□□□□ 0.4
CDX1P47902 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CDX1P47902 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CDX1P47902 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CDX1P47902 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CDX1P47902 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX1P47902 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX1P47902 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CDX1P47902 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX1P47902 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDX1P47902 C17orf82-201ENST00000623772 1530 ntBASIC17.54■□□□□ 0.4
CDX1P47902 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CDX1P47902 UNC93B3-201ENST00000308076 687 ntBASIC17.54■□□□□ 0.4
CDX1P47902 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CDX1P47902 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.54■□□□□ 0.4
CDX1P47902 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CDX1P47902 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.54■□□□□ 0.4
CDX1P47902 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.54■□□□□ 0.4
CDX1P47902 AC241377.3-202ENST00000626088 1088 ntBASIC17.54■□□□□ 0.4
CDX1P47902 AC241585.3-202ENST00000628937 1088 ntBASIC17.54■□□□□ 0.4
CDX1P47902 AC245100.8-202ENST00000629247 1058 ntBASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms