Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 ALO1YML086C 1581 nt3.01□□□□□ -1.93
CUP9P41817 TRS120YDR407C 3870 nt3.01□□□□□ -1.93
CUP9P41817 BCD1YHR040W 1101 nt3.01□□□□□ -1.93
CUP9P41817 YHR180WYHR180W 492 nt3.01□□□□□ -1.93
CUP9P41817 CAP2YIL034C 864 nt3.01□□□□□ -1.93
CUP9P41817 YLL017WYLL017W 312 nt3.01□□□□□ -1.93
CUP9P41817 FOL3YMR113W 1284 nt3.01□□□□□ -1.93
CUP9P41817 BSD2YBR290W 966 nt3.01□□□□□ -1.93
CUP9P41817 YHR080CYHR080C 4038 nt3□□□□□ -1.93
CUP9P41817 KRI1YNL308C 1776 nt3□□□□□ -1.93
CUP9P41817 YLR446WYLR446W 1302 nt3□□□□□ -1.93
CUP9P41817 ERB1YMR049C 2424 nt3□□□□□ -1.93
CUP9P41817 tF(GAA)DtF(GAA)D 73 nt3□□□□□ -1.93
CUP9P41817 tF(GAA)NtF(GAA)N 73 nt3□□□□□ -1.93
CUP9P41817 YGL262WYGL262W 528 nt3□□□□□ -1.93
CUP9P41817 COX23YHR116W 456 nt3□□□□□ -1.93
CUP9P41817 APC9YLR102C 798 nt3□□□□□ -1.93
CUP9P41817 RNA1YMR235C 1224 nt3□□□□□ -1.93
CUP9P41817 YGK3YOL128C 1128 nt3□□□□□ -1.93
CUP9P41817 YPR108W-AYPR108W-A 213 nt3□□□□□ -1.93
CUP9P41817 GLO3YER122C 1482 nt3□□□□□ -1.93
CUP9P41817 ATG21YPL100W 1491 nt3□□□□□ -1.93
CUP9P41817 ALG11YNL048W 1647 nt3□□□□□ -1.93
CUP9P41817 STT4YLR305C 5703 nt3□□□□□ -1.93
CUP9P41817 DSD1YGL196W 1287 nt2.99□□□□□ -1.93
CUP9P41817 RAI1YGL246C 1164 nt2.99□□□□□ -1.93
CUP9P41817 SPT4YGR063C 309 nt2.99□□□□□ -1.93
CUP9P41817 tV(CAC)DtV(CAC)D 73 nt2.99□□□□□ -1.93
CUP9P41817 tV(CAC)HtV(CAC)H 73 nt2.99□□□□□ -1.93
CUP9P41817 ANB1YJR047C 474 nt2.99□□□□□ -1.93
CUP9P41817 SHH3YMR118C 591 nt2.99□□□□□ -1.93
CUP9P41817 INN1YNL152W 1230 nt2.99□□□□□ -1.93
CUP9P41817 YNL320WYNL320W 855 nt2.99□□□□□ -1.93
CUP9P41817 IDH2YOR136W 1110 nt2.99□□□□□ -1.93
CUP9P41817 RPA43YOR340C 981 nt2.99□□□□□ -1.93
CUP9P41817 FDH2YPL275W 711 nt2.99□□□□□ -1.93
CUP9P41817 snR42snR42 351 nt2.99□□□□□ -1.93
CUP9P41817 NUP60YAR002W 1620 nt2.99□□□□□ -1.93
CUP9P41817 GEM1YAL048C 1989 nt2.99□□□□□ -1.93
CUP9P41817 TRM1YDR120C 1713 nt2.99□□□□□ -1.93
CUP9P41817 GZF3YJL110C 1656 nt2.98□□□□□ -1.93
CUP9P41817 DTD1YDL219W 453 nt2.98□□□□□ -1.93
CUP9P41817 YDR464C-AYDR464C-A 189 nt2.98□□□□□ -1.93
CUP9P41817 SDO1YLR022C 753 nt2.98□□□□□ -1.93
CUP9P41817 TPM1YNL079C 600 nt2.98□□□□□ -1.93
CUP9P41817 YNL143CYNL143C 393 nt2.98□□□□□ -1.93
CUP9P41817 ISA2YPR067W 558 nt2.98□□□□□ -1.93
CUP9P41817 YJR030CYJR030C 2238 nt2.98□□□□□ -1.93
CUP9P41817 NGL3YML118W 1518 nt2.98□□□□□ -1.93
CUP9P41817 DSF2YBR007C 2211 nt2.97□□□□□ -1.93
CUP9P41817 MIG3YER028C 1185 nt2.97□□□□□ -1.93
CUP9P41817 YHB1YGR234W 1200 nt2.97□□□□□ -1.93
CUP9P41817 NIP7YPL211W 546 nt2.97□□□□□ -1.93
CUP9P41817 TIM12YBR091C 330 nt2.97□□□□□ -1.93
CUP9P41817 RNT1YMR239C 1416 nt2.96□□□□□ -1.94
CUP9P41817 VAC17YCL063W 1272 nt2.96□□□□□ -1.94
CUP9P41817 NKP1YDR383C 717 nt2.96□□□□□ -1.94
CUP9P41817 VPS71YML041C 843 nt2.96□□□□□ -1.94
CUP9P41817 CAT5YOR125C 702 nt2.96□□□□□ -1.94
CUP9P41817 SUI3YPL237W 858 nt2.96□□□□□ -1.94
CUP9P41817 RTT109YLL002W 1311 nt2.95□□□□□ -1.94
CUP9P41817 STU1YBL034C 4542 nt2.95□□□□□ -1.94
CUP9P41817 APP1YNL094W 1764 nt2.95□□□□□ -1.94
CUP9P41817 PSF1YDR013W 627 nt2.95□□□□□ -1.94
CUP9P41817 CDC26YFR036W 375 nt2.95□□□□□ -1.94
CUP9P41817 ENT3YJR125C 1227 nt2.95□□□□□ -1.94
CUP9P41817 UPS2YLR168C 693 nt2.95□□□□□ -1.94
CUP9P41817 MDJ2YNL328C 441 nt2.95□□□□□ -1.94
CUP9P41817 PEX1YKL197C 3132 nt2.95□□□□□ -1.94
CUP9P41817 FKH1YIL131C 1455 nt2.95□□□□□ -1.94
CUP9P41817 AUS1YOR011W 4185 nt2.95□□□□□ -1.94
CUP9P41817 REC8YPR007C 2043 nt2.95□□□□□ -1.94
CUP9P41817 GAS2YLR343W 1668 nt2.95□□□□□ -1.94
CUP9P41817 ALE1YOR175C 1860 nt2.94□□□□□ -1.94
CUP9P41817 ZDS2YML109W 2829 nt2.94□□□□□ -1.94
CUP9P41817 KAP95YLR347C 2586 nt2.94□□□□□ -1.94
CUP9P41817 NOP6YDL213C 678 nt2.94□□□□□ -1.94
CUP9P41817 YDR431WYDR431W 312 nt2.94□□□□□ -1.94
CUP9P41817 YEL028WYEL028W 462 nt2.94□□□□□ -1.94
CUP9P41817 YML053CYML053C 639 nt2.94□□□□□ -1.94
CUP9P41817 IST1YNL265C 897 nt2.94□□□□□ -1.94
CUP9P41817 YPL168WYPL168W 1293 nt2.94□□□□□ -1.94
CUP9P41817 CMR3YPR013C 954 nt2.94□□□□□ -1.94
CUP9P41817 GPB1YOR371C 2694 nt2.93□□□□□ -1.94
CUP9P41817 ROK1YGL171W 1695 nt2.93□□□□□ -1.94
CUP9P41817 MIH1YMR036C 1665 nt2.93□□□□□ -1.94
CUP9P41817 YOL019WYOL019W 1656 nt2.93□□□□□ -1.94
CUP9P41817 RKM3YBR030W 1659 nt2.93□□□□□ -1.94
CUP9P41817 PTM1YKL039W 1572 nt2.93□□□□□ -1.94
CUP9P41817 SIN3YOL004W 4611 nt2.93□□□□□ -1.94
CUP9P41817 NAM9YNL137C 1461 nt2.93□□□□□ -1.94
CUP9P41817 JIP5YPR169W 1479 nt2.93□□□□□ -1.94
CUP9P41817 YGR017WYGR017W 894 nt2.93□□□□□ -1.94
CUP9P41817 YAL004WYAL004W 648 nt2.93□□□□□ -1.94
CUP9P41817 SOD1YJR104C 465 nt2.93□□□□□ -1.94
CUP9P41817 SNO1YMR095C 675 nt2.93□□□□□ -1.94
CUP9P41817 GOT1YMR292W 417 nt2.93□□□□□ -1.94
CUP9P41817 RPL18AYOL120C 561 nt2.93□□□□□ -1.94
CUP9P41817 PSF3YOL146W 585 nt2.93□□□□□ -1.94
CUP9P41817 YPL088WYPL088W 1029 nt2.93□□□□□ -1.94
Retrieved 100 of 7,029 protein–RNA pairs in 15.4 ms