Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MMP1P03956 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
MMP1P03956 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
MMP1P03956 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
MMP1P03956 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
MMP1P03956 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MMP1P03956 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
MMP1P03956 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
MMP1P03956 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MMP1P03956 SUDS3P1-201ENST00000505831 966 ntBASIC25.08■■□□□ 1.61
MMP1P03956 AC024257.2-201ENST00000549699 147 ntBASIC25.08■■□□□ 1.61
MMP1P03956 MIR4767-201ENST00000582827 78 ntBASIC25.08■■□□□ 1.61
MMP1P03956 AL136162.1-201ENST00000607711 1078 ntBASIC25.08■■□□□ 1.61
MMP1P03956 AC068587.7-201ENST00000641602 218 ntBASIC25.08■■□□□ 1.61
MMP1P03956 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
MMP1P03956 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
MMP1P03956 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
MMP1P03956 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
MMP1P03956 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
MMP1P03956 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.6
MMP1P03956 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MMP1P03956 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC25.07■■□□□ 1.6
MMP1P03956 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MMP1P03956 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
MMP1P03956 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC25.07■■□□□ 1.6
MMP1P03956 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC25.07■■□□□ 1.6
MMP1P03956 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
MMP1P03956 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
MMP1P03956 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
MMP1P03956 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
MMP1P03956 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.07■■□□□ 1.6
MMP1P03956 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC25.07■■□□□ 1.6
MMP1P03956 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC25.07■■□□□ 1.6
MMP1P03956 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC25.07■■□□□ 1.6
MMP1P03956 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MMP1P03956 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
MMP1P03956 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
MMP1P03956 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MMP1P03956 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC25.06■■□□□ 1.6
MMP1P03956 AC135279.3-201ENST00000610945 1311 ntBASIC25.06■■□□□ 1.6
MMP1P03956 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC25.06■■□□□ 1.6
MMP1P03956 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC25.06■■□□□ 1.6
MMP1P03956 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
MMP1P03956 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC25.05■■□□□ 1.6
MMP1P03956 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
MMP1P03956 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC25.05■■□□□ 1.6
MMP1P03956 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MMP1P03956 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
MMP1P03956 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC25.05■■□□□ 1.6
MMP1P03956 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
MMP1P03956 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
MMP1P03956 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
MMP1P03956 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
MMP1P03956 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MMP1P03956 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
MMP1P03956 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MMP1P03956 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC25.04■■□□□ 1.6
MMP1P03956 LGR4-203ENST00000480977 492 ntTSL 2 BASIC25.04■■□□□ 1.6
MMP1P03956 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.04■■□□□ 1.6
MMP1P03956 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.04■■□□□ 1.6
MMP1P03956 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.04■■□□□ 1.6
MMP1P03956 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC25.04■■□□□ 1.6
MMP1P03956 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
MMP1P03956 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
MMP1P03956 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MMP1P03956 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
MMP1P03956 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC25.03■■□□□ 1.6
MMP1P03956 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC25.03■■□□□ 1.6
MMP1P03956 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC25.03■■□□□ 1.6
MMP1P03956 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MMP1P03956 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
MMP1P03956 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
MMP1P03956 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
MMP1P03956 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
MMP1P03956 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MMP1P03956 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
MMP1P03956 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MMP1P03956 EDA-201ENST00000338901 1233 ntBASIC25.02■■□□□ 1.6
MMP1P03956 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
MMP1P03956 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.02■■□□□ 1.6
MMP1P03956 AC079089.2-201ENST00000531211 1277 ntBASIC25.02■■□□□ 1.6
MMP1P03956 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.02■■□□□ 1.6
MMP1P03956 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.02■■□□□ 1.6
MMP1P03956 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.02■■□□□ 1.6
MMP1P03956 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
MMP1P03956 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
MMP1P03956 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
MMP1P03956 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC25.01■■□□□ 1.59
MMP1P03956 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
MMP1P03956 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.01■■□□□ 1.59
MMP1P03956 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
MMP1P03956 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
MMP1P03956 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MMP1P03956 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
MMP1P03956 MYB-221ENST00000527615 2381 ntTSL 5 BASIC25.01■■□□□ 1.59
MMP1P03956 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC25■■□□□ 1.59
MMP1P03956 C11orf96-202ENST00000528572 1834 ntBASIC25■■□□□ 1.59
MMP1P03956 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC25■■□□□ 1.59
MMP1P03956 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC25■■□□□ 1.59
MMP1P03956 LINC00565-201ENST00000562710 2331 ntBASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms