Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
PROM1O43490 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PROM1O43490 AC080038.3-201ENST00000623346 1952 ntBASIC20.63■□□□□ 0.89
PROM1O43490 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PROM1O43490 AC242852.2-201ENST00000615738 1807 ntBASIC20.63■□□□□ 0.89
PROM1O43490 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PROM1O43490 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
PROM1O43490 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.63■□□□□ 0.89
PROM1O43490 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
PROM1O43490 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
PROM1O43490 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PROM1O43490 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.63■□□□□ 0.89
PROM1O43490 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PROM1O43490 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PROM1O43490 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PROM1O43490 BX842568.3-201ENST00000418104 571 ntBASIC20.62■□□□□ 0.89
PROM1O43490 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.62■□□□□ 0.89
PROM1O43490 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.62■□□□□ 0.89
PROM1O43490 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PROM1O43490 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PROM1O43490 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.62■□□□□ 0.89
PROM1O43490 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
PROM1O43490 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PROM1O43490 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
PROM1O43490 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PROM1O43490 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
PROM1O43490 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
PROM1O43490 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PROM1O43490 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.61■□□□□ 0.89
PROM1O43490 AP005435.1-201ENST00000529293 1178 ntBASIC20.61■□□□□ 0.89
PROM1O43490 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.61■□□□□ 0.89
PROM1O43490 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.61■□□□□ 0.89
PROM1O43490 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PROM1O43490 AC233992.3-201ENST00000607491 485 ntBASIC20.61■□□□□ 0.89
PROM1O43490 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.61■□□□□ 0.89
PROM1O43490 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PROM1O43490 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PROM1O43490 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.61■□□□□ 0.89
PROM1O43490 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.61■□□□□ 0.89
PROM1O43490 ECEL1P1-201ENST00000373592 1742 ntBASIC20.61■□□□□ 0.89
PROM1O43490 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PROM1O43490 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PROM1O43490 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PROM1O43490 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PROM1O43490 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.6■□□□□ 0.89
PROM1O43490 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.6■□□□□ 0.89
PROM1O43490 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
PROM1O43490 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
PROM1O43490 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.6■□□□□ 0.89
PROM1O43490 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.6■□□□□ 0.89
PROM1O43490 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
PROM1O43490 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
PROM1O43490 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PROM1O43490 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
PROM1O43490 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
PROM1O43490 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
PROM1O43490 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PROM1O43490 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PROM1O43490 EDA-201ENST00000338901 1233 ntBASIC20.59■□□□□ 0.89
PROM1O43490 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.59■□□□□ 0.89
PROM1O43490 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PROM1O43490 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
PROM1O43490 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PROM1O43490 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PROM1O43490 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.58■□□□□ 0.89
PROM1O43490 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.58■□□□□ 0.89
PROM1O43490 AC139530.1-201ENST00000575312 1977 ntBASIC20.58■□□□□ 0.89
PROM1O43490 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PROM1O43490 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
PROM1O43490 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.58■□□□□ 0.89
PROM1O43490 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PROM1O43490 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PROM1O43490 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.58■□□□□ 0.89
PROM1O43490 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.58■□□□□ 0.89
PROM1O43490 AC133561.4-201ENST00000566112 224 ntBASIC20.58■□□□□ 0.89
PROM1O43490 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PROM1O43490 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
PROM1O43490 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PROM1O43490 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PROM1O43490 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PROM1O43490 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
PROM1O43490 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.57■□□□□ 0.88
PROM1O43490 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PROM1O43490 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PROM1O43490 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.57■□□□□ 0.88
PROM1O43490 AC010141.3-201ENST00000456659 717 ntBASIC20.57■□□□□ 0.88
PROM1O43490 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PROM1O43490 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PROM1O43490 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PROM1O43490 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms