Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB3O15347 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HMGB3O15347 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 TPT1-202ENST00000379055 948 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB3O15347 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 AC026202.3-201ENST00000600805 1127 ntBASIC17.51■□□□□ 0.39
HMGB3O15347 AC007029.1-201ENST00000604183 313 ntBASIC17.51■□□□□ 0.39
HMGB3O15347 AC079630.1-202ENST00000618127 1840 ntBASIC17.51■□□□□ 0.39
HMGB3O15347 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HMGB3O15347 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 AC026310.3-201ENST00000625186 2373 ntBASIC17.51■□□□□ 0.39
HMGB3O15347 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGB3O15347 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
HMGB3O15347 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HMGB3O15347 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.5■□□□□ 0.39
HMGB3O15347 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGB3O15347 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HMGB3O15347 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB3O15347 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HMGB3O15347 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB3O15347 ALDH1A3-203ENST00000557963 1670 ntBASIC17.49■□□□□ 0.39
HMGB3O15347 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB3O15347 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HMGB3O15347 MACF1-219ENST00000484793 834 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGB3O15347 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGB3O15347 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGB3O15347 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB3O15347 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB3O15347 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB3O15347 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB3O15347 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB3O15347 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
HMGB3O15347 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
HMGB3O15347 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB3O15347 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
HMGB3O15347 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB3O15347 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGB3O15347 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGB3O15347 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB3O15347 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB3O15347 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HMGB3O15347 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB3O15347 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HMGB3O15347 AC022413.1-201ENST00000624602 984 ntBASIC17.47■□□□□ 0.39
HMGB3O15347 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGB3O15347 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB3O15347 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGB3O15347 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
HMGB3O15347 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
HMGB3O15347 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HMGB3O15347 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGB3O15347 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGB3O15347 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.46■□□□□ 0.39
HMGB3O15347 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms