Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CNOT4O95628 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.33■□□□□ 0.68
CNOT4O95628 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CNOT4O95628 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CNOT4O95628 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CNOT4O95628 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CNOT4O95628 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CNOT4O95628 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CNOT4O95628 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CNOT4O95628 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.32■□□□□ 0.68
CNOT4O95628 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.32■□□□□ 0.68
CNOT4O95628 AL358852.1-201ENST00000623174 1268 ntBASIC19.32■□□□□ 0.68
CNOT4O95628 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CNOT4O95628 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CNOT4O95628 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CNOT4O95628 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CNOT4O95628 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.31■□□□□ 0.68
CNOT4O95628 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CNOT4O95628 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
CNOT4O95628 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.31■□□□□ 0.68
CNOT4O95628 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CNOT4O95628 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.31■□□□□ 0.68
CNOT4O95628 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.31■□□□□ 0.68
CNOT4O95628 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CNOT4O95628 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CNOT4O95628 PKD1P6-201ENST00000343738 4769 ntBASIC19.31■□□□□ 0.68
CNOT4O95628 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CNOT4O95628 AC133561.1-201ENST00000568600 2415 ntBASIC19.31■□□□□ 0.68
CNOT4O95628 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CNOT4O95628 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CNOT4O95628 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CNOT4O95628 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CNOT4O95628 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CNOT4O95628 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CNOT4O95628 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CNOT4O95628 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CNOT4O95628 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.3■□□□□ 0.68
CNOT4O95628 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.3■□□□□ 0.68
CNOT4O95628 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.3■□□□□ 0.68
CNOT4O95628 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.3■□□□□ 0.68
CNOT4O95628 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.3■□□□□ 0.68
CNOT4O95628 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CNOT4O95628 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CNOT4O95628 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CNOT4O95628 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.3■□□□□ 0.68
CNOT4O95628 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CNOT4O95628 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.3■□□□□ 0.68
CNOT4O95628 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.3■□□□□ 0.68
CNOT4O95628 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.29■□□□□ 0.68
CNOT4O95628 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.29■□□□□ 0.68
CNOT4O95628 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNOT4O95628 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CNOT4O95628 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CNOT4O95628 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.29■□□□□ 0.68
CNOT4O95628 AC010141.3-201ENST00000456659 717 ntBASIC19.29■□□□□ 0.68
CNOT4O95628 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.29■□□□□ 0.68
CNOT4O95628 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.29■□□□□ 0.68
CNOT4O95628 AL354811.1-201ENST00000610286 706 ntBASIC19.29■□□□□ 0.68
CNOT4O95628 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.29■□□□□ 0.68
CNOT4O95628 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CNOT4O95628 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CNOT4O95628 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNOT4O95628 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNOT4O95628 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CNOT4O95628 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNOT4O95628 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CNOT4O95628 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.28■□□□□ 0.68
CNOT4O95628 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNOT4O95628 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.28■□□□□ 0.68
CNOT4O95628 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNOT4O95628 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.28■□□□□ 0.68
CNOT4O95628 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CNOT4O95628 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.27■□□□□ 0.68
CNOT4O95628 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CNOT4O95628 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CNOT4O95628 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.27■□□□□ 0.68
CNOT4O95628 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.27■□□□□ 0.67
CNOT4O95628 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CNOT4O95628 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.27■□□□□ 0.67
CNOT4O95628 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CNOT4O95628 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CNOT4O95628 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.27■□□□□ 0.67
CNOT4O95628 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.26■□□□□ 0.67
CNOT4O95628 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.26■□□□□ 0.67
CNOT4O95628 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.26■□□□□ 0.67
CNOT4O95628 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.26■□□□□ 0.67
CNOT4O95628 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CNOT4O95628 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CNOT4O95628 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CNOT4O95628 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms