Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC29.34■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 AC087742.1-201ENST00000575880 1738 ntBASIC29.34■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC29.34■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC29.34■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC29.34■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC29.33■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC29.33■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
SENP3-EIF4A1A0A087X0R7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC29.32■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC29.32■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC29.32■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC29.32■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 LINC00565-201ENST00000562710 2331 ntBASIC29.32■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC29.32■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 pRNA.6-201ENST00000610482 90 ntBASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 pRNA.5-201ENST00000612139 90 ntBASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 pRNA.11-201ENST00000618423 90 ntBASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 pRNA.13-201ENST00000619112 90 ntBASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 AC009086.3-201ENST00000623486 1008 ntBASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC29.31■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 GATM-206ENST00000558336 1522 ntTSL 2 BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 DUX4L4-201ENST00000566884 1269 ntBASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC29.28■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC29.27■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC29.27■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC29.27■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
SENP3-EIF4A1A0A087X0R7 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC29.26■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 HLA-L-209ENST00000420110 1011 ntBASIC29.26■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 TMEM191A-211ENST00000637163 1067 ntBASIC29.26■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC29.26■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 FP325331.1-202ENST00000623531 1380 ntBASIC29.26■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC29.25■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms