Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC23.36■■□□□ 1.33
CDX2Q99626 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.36■■□□□ 1.33
CDX2Q99626 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
CDX2Q99626 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDX2Q99626 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.36■■□□□ 1.33
CDX2Q99626 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC23.36■■□□□ 1.33
CDX2Q99626 AC211429.1-201ENST00000415277 523 ntBASIC23.35■■□□□ 1.33
CDX2Q99626 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC23.35■■□□□ 1.33
CDX2Q99626 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC23.35■■□□□ 1.33
CDX2Q99626 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.35■■□□□ 1.33
CDX2Q99626 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.35■■□□□ 1.33
CDX2Q99626 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDX2Q99626 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDX2Q99626 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC23.35■■□□□ 1.33
CDX2Q99626 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDX2Q99626 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDX2Q99626 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDX2Q99626 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.34■■□□□ 1.33
CDX2Q99626 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC23.34■■□□□ 1.33
CDX2Q99626 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDX2Q99626 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
CDX2Q99626 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CDX2Q99626 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CDX2Q99626 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDX2Q99626 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC23.33■■□□□ 1.33
CDX2Q99626 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CDX2Q99626 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CDX2Q99626 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.33■■□□□ 1.33
CDX2Q99626 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.33■■□□□ 1.33
CDX2Q99626 GXYLT1P3-201ENST00000453058 1193 ntBASIC23.33■■□□□ 1.33
CDX2Q99626 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CDX2Q99626 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.33■■□□□ 1.33
CDX2Q99626 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC23.33■■□□□ 1.33
CDX2Q99626 AC083880.1-201ENST00000608266 535 ntBASIC23.33■■□□□ 1.33
CDX2Q99626 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC23.33■■□□□ 1.32
CDX2Q99626 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CDX2Q99626 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
CDX2Q99626 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CDX2Q99626 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CDX2Q99626 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CDX2Q99626 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CDX2Q99626 PEX7-202ENST00000367756 680 ntTSL 3 BASIC23.32■■□□□ 1.32
CDX2Q99626 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CDX2Q99626 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC23.32■■□□□ 1.32
CDX2Q99626 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CDX2Q99626 AP001160.3-201ENST00000601484 763 ntBASIC23.32■■□□□ 1.32
CDX2Q99626 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC23.32■■□□□ 1.32
CDX2Q99626 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC23.32■■□□□ 1.32
CDX2Q99626 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC23.32■■□□□ 1.32
CDX2Q99626 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDX2Q99626 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDX2Q99626 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
CDX2Q99626 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
CDX2Q99626 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.31■■□□□ 1.32
CDX2Q99626 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.31■■□□□ 1.32
CDX2Q99626 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDX2Q99626 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CDX2Q99626 AC010536.3-201ENST00000620306 533 ntBASIC23.31■■□□□ 1.32
CDX2Q99626 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CDX2Q99626 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDX2Q99626 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.3■■□□□ 1.32
CDX2Q99626 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.3■■□□□ 1.32
CDX2Q99626 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
CDX2Q99626 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC23.3■■□□□ 1.32
CDX2Q99626 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.3■■□□□ 1.32
CDX2Q99626 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDX2Q99626 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDX2Q99626 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.3■■□□□ 1.32
CDX2Q99626 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CDX2Q99626 MME-217ENST00000616757 1315 ntTSL 5 BASIC23.3■■□□□ 1.32
CDX2Q99626 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDX2Q99626 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CDX2Q99626 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC23.29■■□□□ 1.32
CDX2Q99626 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CDX2Q99626 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CDX2Q99626 LINC01529-204ENST00000636474 1715 ntBASIC23.29■■□□□ 1.32
CDX2Q99626 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
CDX2Q99626 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CDX2Q99626 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CDX2Q99626 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CDX2Q99626 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.29■■□□□ 1.32
CDX2Q99626 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDX2Q99626 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.28■■□□□ 1.32
CDX2Q99626 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.28■■□□□ 1.32
CDX2Q99626 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
CDX2Q99626 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDX2Q99626 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDX2Q99626 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDX2Q99626 KRT18P21-201ENST00000515767 1272 ntBASIC23.28■■□□□ 1.32
CDX2Q99626 RHOD-202ENST00000532559 538 ntTSL 3 BASIC23.28■■□□□ 1.32
CDX2Q99626 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDX2Q99626 REXO1L12P-201ENST00000622156 912 ntBASIC23.28■■□□□ 1.32
CDX2Q99626 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
CDX2Q99626 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.28■■□□□ 1.32
CDX2Q99626 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
CDX2Q99626 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
CDX2Q99626 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.27■■□□□ 1.32
CDX2Q99626 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.27■■□□□ 1.32
CDX2Q99626 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CDX2Q99626 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms