Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLIP3Q96DZ5 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLIP3Q96DZ5 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLIP3Q96DZ5 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CLIP3Q96DZ5 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLIP3Q96DZ5 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLIP3Q96DZ5 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21■□□□□ 0.95
CLIP3Q96DZ5 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLIP3Q96DZ5 AC104564.3-201ENST00000582367 638 ntBASIC21■□□□□ 0.95
CLIP3Q96DZ5 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21■□□□□ 0.95
CLIP3Q96DZ5 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLIP3Q96DZ5 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLIP3Q96DZ5 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21■□□□□ 0.95
CLIP3Q96DZ5 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLIP3Q96DZ5 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLIP3Q96DZ5 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CLIP3Q96DZ5 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLIP3Q96DZ5 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.99■□□□□ 0.95
CLIP3Q96DZ5 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLIP3Q96DZ5 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.99■□□□□ 0.95
CLIP3Q96DZ5 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLIP3Q96DZ5 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLIP3Q96DZ5 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 MIR572-201ENST00000384983 95 ntBASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLIP3Q96DZ5 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 AL358852.1-201ENST00000623174 1268 ntBASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 AL353803.4-201ENST00000565882 1934 ntBASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 AC079834.2-201ENST00000609776 1949 ntBASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLIP3Q96DZ5 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 AP005435.1-201ENST00000529293 1178 ntBASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 AC004687.1-201ENST00000579003 1625 ntBASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP3Q96DZ5 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.95■□□□□ 0.94
CLIP3Q96DZ5 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CLIP3Q96DZ5 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.95■□□□□ 0.94
CLIP3Q96DZ5 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.95■□□□□ 0.94
CLIP3Q96DZ5 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.95■□□□□ 0.94
CLIP3Q96DZ5 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CLIP3Q96DZ5 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLIP3Q96DZ5 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.95■□□□□ 0.94
CLIP3Q96DZ5 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CLIP3Q96DZ5 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLIP3Q96DZ5 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 AC012414.1-201ENST00000556676 535 ntBASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 AL354811.1-201ENST00000610286 706 ntBASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.94■□□□□ 0.94
CLIP3Q96DZ5 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms