Protein–RNA interactions for Protein: P49746

THBS3, Thrombospondin-3, humanhuman

Predictions only

Length 956 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3P49746 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.03■□□□□ 0.48
THBS3P49746 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
THBS3P49746 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
THBS3P49746 LINC00526-201ENST00000581067 1875 ntBASIC18.03■□□□□ 0.48
THBS3P49746 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
THBS3P49746 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
THBS3P49746 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.03■□□□□ 0.48
THBS3P49746 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
THBS3P49746 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
THBS3P49746 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
THBS3P49746 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.03■□□□□ 0.48
THBS3P49746 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
THBS3P49746 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
THBS3P49746 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
THBS3P49746 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
THBS3P49746 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
THBS3P49746 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
THBS3P49746 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
THBS3P49746 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
THBS3P49746 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
THBS3P49746 AC009086.3-201ENST00000623486 1008 ntBASIC18.02■□□□□ 0.48
THBS3P49746 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
THBS3P49746 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
THBS3P49746 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.01■□□□□ 0.47
THBS3P49746 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
THBS3P49746 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
THBS3P49746 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
THBS3P49746 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
THBS3P49746 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.01■□□□□ 0.47
THBS3P49746 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.01■□□□□ 0.47
THBS3P49746 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.01■□□□□ 0.47
THBS3P49746 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
THBS3P49746 DUX4L4-201ENST00000566884 1269 ntBASIC18.01■□□□□ 0.47
THBS3P49746 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC18.01■□□□□ 0.47
THBS3P49746 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.01■□□□□ 0.47
THBS3P49746 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
THBS3P49746 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.01■□□□□ 0.47
THBS3P49746 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
THBS3P49746 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
THBS3P49746 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
THBS3P49746 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
THBS3P49746 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18■□□□□ 0.47
THBS3P49746 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
THBS3P49746 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18■□□□□ 0.47
THBS3P49746 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
THBS3P49746 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC18■□□□□ 0.47
THBS3P49746 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
THBS3P49746 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
THBS3P49746 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
THBS3P49746 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
THBS3P49746 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18■□□□□ 0.47
THBS3P49746 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18■□□□□ 0.47
THBS3P49746 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
THBS3P49746 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18■□□□□ 0.47
THBS3P49746 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
THBS3P49746 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
THBS3P49746 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18■□□□□ 0.47
THBS3P49746 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
THBS3P49746 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.99■□□□□ 0.47
THBS3P49746 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
THBS3P49746 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
THBS3P49746 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
THBS3P49746 TFPT-201ENST00000391757 774 ntTSL 5 BASIC17.99■□□□□ 0.47
THBS3P49746 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
THBS3P49746 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC17.99■□□□□ 0.47
THBS3P49746 MIR6724-1-201ENST00000616420 92 ntBASIC17.99■□□□□ 0.47
THBS3P49746 MIR6724-2-201ENST00000616483 92 ntBASIC17.99■□□□□ 0.47
THBS3P49746 MIR6724-4-201ENST00000617390 92 ntBASIC17.99■□□□□ 0.47
THBS3P49746 MIR6724-3-201ENST00000622482 92 ntBASIC17.99■□□□□ 0.47
THBS3P49746 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
THBS3P49746 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
THBS3P49746 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
THBS3P49746 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
THBS3P49746 EP400NL-214ENST00000641289 2402 ntBASIC17.99■□□□□ 0.47
THBS3P49746 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
THBS3P49746 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
THBS3P49746 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
THBS3P49746 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
THBS3P49746 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
THBS3P49746 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
THBS3P49746 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
THBS3P49746 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
THBS3P49746 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.98■□□□□ 0.47
THBS3P49746 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.98■□□□□ 0.47
THBS3P49746 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.98■□□□□ 0.47
THBS3P49746 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
THBS3P49746 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
THBS3P49746 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
THBS3P49746 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
THBS3P49746 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
THBS3P49746 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
THBS3P49746 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
THBS3P49746 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
THBS3P49746 AC019069.1-201ENST00000610008 1333 ntBASIC17.98■□□□□ 0.47
THBS3P49746 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.97■□□□□ 0.47
THBS3P49746 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
THBS3P49746 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC17.97■□□□□ 0.47
THBS3P49746 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
THBS3P49746 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC17.97■□□□□ 0.47
THBS3P49746 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms