Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
MSX2P35548 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
MSX2P35548 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSX2P35548 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSX2P35548 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSX2P35548 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSX2P35548 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.85■□□□□ 0.93
MSX2P35548 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.85■□□□□ 0.93
MSX2P35548 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.85■□□□□ 0.93
MSX2P35548 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
MSX2P35548 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSX2P35548 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSX2P35548 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.85■□□□□ 0.93
MSX2P35548 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSX2P35548 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSX2P35548 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
MSX2P35548 AC144652.1-201ENST00000609974 1624 ntBASIC20.85■□□□□ 0.93
MSX2P35548 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSX2P35548 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSX2P35548 AF106564.1-201ENST00000607058 2553 ntBASIC20.85■□□□□ 0.93
MSX2P35548 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSX2P35548 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSX2P35548 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSX2P35548 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSX2P35548 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSX2P35548 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSX2P35548 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
MSX2P35548 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSX2P35548 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSX2P35548 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.84■□□□□ 0.93
MSX2P35548 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.84■□□□□ 0.93
MSX2P35548 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSX2P35548 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSX2P35548 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.83■□□□□ 0.93
MSX2P35548 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.83■□□□□ 0.93
MSX2P35548 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
MSX2P35548 AC004448.1-201ENST00000458332 883 ntBASIC20.83■□□□□ 0.93
MSX2P35548 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSX2P35548 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.83■□□□□ 0.93
MSX2P35548 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.83■□□□□ 0.92
MSX2P35548 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.83■□□□□ 0.92
MSX2P35548 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSX2P35548 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
MSX2P35548 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
MSX2P35548 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSX2P35548 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSX2P35548 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
MSX2P35548 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.82■□□□□ 0.92
MSX2P35548 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.82■□□□□ 0.92
MSX2P35548 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 AC129492.7-201ENST00000622992 756 ntBASIC20.82■□□□□ 0.92
MSX2P35548 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
MSX2P35548 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSX2P35548 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSX2P35548 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.81■□□□□ 0.92
MSX2P35548 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
MSX2P35548 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.81■□□□□ 0.92
MSX2P35548 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
MSX2P35548 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.81■□□□□ 0.92
MSX2P35548 AC120024.1-201ENST00000562672 995 ntBASIC20.81■□□□□ 0.92
MSX2P35548 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
MSX2P35548 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSX2P35548 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSX2P35548 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX2P35548 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX2P35548 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.8■□□□□ 0.92
MSX2P35548 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX2P35548 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX2P35548 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX2P35548 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.8■□□□□ 0.92
MSX2P35548 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.8■□□□□ 0.92
MSX2P35548 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSX2P35548 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.8■□□□□ 0.92
MSX2P35548 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
MSX2P35548 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
MSX2P35548 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSX2P35548 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
MSX2P35548 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
MSX2P35548 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSX2P35548 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSX2P35548 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.79■□□□□ 0.92
MSX2P35548 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSX2P35548 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
MSX2P35548 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms