Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CKS2P33552 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.09■□□□□ 0.17
CKS2P33552 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CKS2P33552 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CKS2P33552 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CKS2P33552 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CKS2P33552 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CKS2P33552 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CKS2P33552 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CKS2P33552 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CKS2P33552 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CKS2P33552 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CKS2P33552 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
CKS2P33552 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC16.08■□□□□ 0.16
CKS2P33552 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC16.07■□□□□ 0.16
CKS2P33552 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.07■□□□□ 0.16
CKS2P33552 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.07■□□□□ 0.16
CKS2P33552 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC16.07■□□□□ 0.16
CKS2P33552 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.07■□□□□ 0.16
CKS2P33552 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CKS2P33552 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CKS2P33552 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CKS2P33552 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC16.06■□□□□ 0.16
CKS2P33552 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CKS2P33552 AC005229.4-201ENST00000610085 2198 ntBASIC16.06■□□□□ 0.16
CKS2P33552 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CKS2P33552 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CKS2P33552 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CKS2P33552 AC131274.2-201ENST00000580697 1507 ntBASIC16.06■□□□□ 0.16
CKS2P33552 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CKS2P33552 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CKS2P33552 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
CKS2P33552 MACF1-219ENST00000484793 834 ntTSL 2 BASIC16.06■□□□□ 0.16
CKS2P33552 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC16.06■□□□□ 0.16
CKS2P33552 AC016575.1-201ENST00000607026 382 ntBASIC16.06■□□□□ 0.16
CKS2P33552 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CKS2P33552 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CKS2P33552 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CKS2P33552 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CKS2P33552 AC010542.4-201ENST00000563151 1910 ntBASIC16.06■□□□□ 0.16
CKS2P33552 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC16.05■□□□□ 0.16
CKS2P33552 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CKS2P33552 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CKS2P33552 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CKS2P33552 AC087742.1-201ENST00000575880 1738 ntBASIC16.05■□□□□ 0.16
CKS2P33552 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
CKS2P33552 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CKS2P33552 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.04■□□□□ 0.16
CKS2P33552 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 RPS2P7-201ENST00000447334 885 ntBASIC16.04■□□□□ 0.16
CKS2P33552 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 AC022413.1-201ENST00000624602 984 ntBASIC16.04■□□□□ 0.16
CKS2P33552 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC16.04■□□□□ 0.16
CKS2P33552 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 AL121603.2-201ENST00000557373 2117 ntBASIC16.04■□□□□ 0.16
CKS2P33552 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CKS2P33552 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CKS2P33552 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC16.03■□□□□ 0.16
CKS2P33552 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.03■□□□□ 0.16
CKS2P33552 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CKS2P33552 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms