Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
HMGB1P09429 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
HMGB1P09429 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC25.89■■□□□ 1.74
HMGB1P09429 AC137767.1-201ENST00000602918 1920 ntBASIC25.89■■□□□ 1.74
HMGB1P09429 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
HMGB1P09429 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC25.89■■□□□ 1.74
HMGB1P09429 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
HMGB1P09429 AC068587.7-201ENST00000641602 218 ntBASIC25.89■■□□□ 1.74
HMGB1P09429 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC25.89■■□□□ 1.74
HMGB1P09429 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
HMGB1P09429 AC139530.1-201ENST00000575312 1977 ntBASIC25.89■■□□□ 1.73
HMGB1P09429 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
HMGB1P09429 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
HMGB1P09429 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.73
HMGB1P09429 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
HMGB1P09429 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.88■■□□□ 1.73
HMGB1P09429 AC136469.2-201ENST00000623944 1028 ntBASIC25.88■■□□□ 1.73
HMGB1P09429 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC25.88■■□□□ 1.73
HMGB1P09429 EP400NL-214ENST00000641289 2402 ntBASIC25.88■■□□□ 1.73
HMGB1P09429 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
HMGB1P09429 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
HMGB1P09429 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC25.88■■□□□ 1.73
HMGB1P09429 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGB1P09429 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGB1P09429 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
HMGB1P09429 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGB1P09429 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
HMGB1P09429 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC25.87■■□□□ 1.73
HMGB1P09429 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.87■■□□□ 1.73
HMGB1P09429 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGB1P09429 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC25.87■■□□□ 1.73
HMGB1P09429 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGB1P09429 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.87■■□□□ 1.73
HMGB1P09429 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGB1P09429 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGB1P09429 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
HMGB1P09429 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
HMGB1P09429 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC25.86■■□□□ 1.73
HMGB1P09429 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
HMGB1P09429 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
HMGB1P09429 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
HMGB1P09429 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
HMGB1P09429 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
HMGB1P09429 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC25.85■■□□□ 1.73
HMGB1P09429 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
HMGB1P09429 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
HMGB1P09429 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC25.85■■□□□ 1.73
HMGB1P09429 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
HMGB1P09429 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC25.85■■□□□ 1.73
HMGB1P09429 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
HMGB1P09429 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
HMGB1P09429 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.84■■□□□ 1.73
HMGB1P09429 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
HMGB1P09429 AC092053.2-201ENST00000640557 1818 ntBASIC25.84■■□□□ 1.73
HMGB1P09429 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
HMGB1P09429 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
HMGB1P09429 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
HMGB1P09429 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.84■■□□□ 1.73
HMGB1P09429 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC25.84■■□□□ 1.73
HMGB1P09429 USP45-205ENST00000472914 1617 ntTSL 5 BASIC25.84■■□□□ 1.73
HMGB1P09429 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
HMGB1P09429 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC25.84■■□□□ 1.73
HMGB1P09429 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.83■■□□□ 1.73
HMGB1P09429 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
HMGB1P09429 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC25.83■■□□□ 1.73
HMGB1P09429 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
HMGB1P09429 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
HMGB1P09429 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.83■■□□□ 1.73
HMGB1P09429 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC25.83■■□□□ 1.73
HMGB1P09429 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC25.83■■□□□ 1.73
HMGB1P09429 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
HMGB1P09429 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
HMGB1P09429 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
HMGB1P09429 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
HMGB1P09429 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.82■■□□□ 1.72
HMGB1P09429 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
HMGB1P09429 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
HMGB1P09429 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
HMGB1P09429 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.82■■□□□ 1.72
HMGB1P09429 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
HMGB1P09429 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC25.82■■□□□ 1.72
HMGB1P09429 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
HMGB1P09429 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
HMGB1P09429 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
HMGB1P09429 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
HMGB1P09429 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
HMGB1P09429 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
HMGB1P09429 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
HMGB1P09429 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
HMGB1P09429 RBM38-205ENST00000440234 686 ntTSL 2 BASIC25.81■■□□□ 1.72
HMGB1P09429 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
HMGB1P09429 EI24-211ENST00000534546 1544 ntTSL 2 BASIC25.81■■□□□ 1.72
HMGB1P09429 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
HMGB1P09429 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
HMGB1P09429 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC25.81■■□□□ 1.72
HMGB1P09429 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC25.8■■□□□ 1.72
HMGB1P09429 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC25.8■■□□□ 1.72
HMGB1P09429 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
HMGB1P09429 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
HMGB1P09429 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms