Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VIMP08670 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VIMP08670 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.95■■□□□ 1.1
VIMP08670 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
VIMP08670 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.95■■□□□ 1.1
VIMP08670 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.94■■□□□ 1.1
VIMP08670 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VIMP08670 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.94■■□□□ 1.1
VIMP08670 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
VIMP08670 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.94■■□□□ 1.1
VIMP08670 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.94■■□□□ 1.1
VIMP08670 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.94■■□□□ 1.1
VIMP08670 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
VIMP08670 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VIMP08670 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VIMP08670 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VIMP08670 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.93■■□□□ 1.1
VIMP08670 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VIMP08670 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VIMP08670 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VIMP08670 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.93■■□□□ 1.1
VIMP08670 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VIMP08670 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VIMP08670 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
VIMP08670 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VIMP08670 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
VIMP08670 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
VIMP08670 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VIMP08670 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VIMP08670 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VIMP08670 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VIMP08670 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
VIMP08670 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VIMP08670 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.92■■□□□ 1.1
VIMP08670 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.92■■□□□ 1.1
VIMP08670 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
VIMP08670 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VIMP08670 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
VIMP08670 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
VIMP08670 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
VIMP08670 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VIMP08670 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
VIMP08670 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VIMP08670 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
VIMP08670 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VIMP08670 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.91■■□□□ 1.1
VIMP08670 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VIMP08670 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VIMP08670 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VIMP08670 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
VIMP08670 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VIMP08670 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VIMP08670 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VIMP08670 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VIMP08670 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VIMP08670 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
VIMP08670 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VIMP08670 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
VIMP08670 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.9■■□□□ 1.1
VIMP08670 MIR639-201ENST00000384974 98 ntBASIC21.9■■□□□ 1.1
VIMP08670 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VIMP08670 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.9■■□□□ 1.1
VIMP08670 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VIMP08670 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
VIMP08670 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VIMP08670 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VIMP08670 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
VIMP08670 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
VIMP08670 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.89■■□□□ 1.1
VIMP08670 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VIMP08670 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VIMP08670 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VIMP08670 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.89■■□□□ 1.09
VIMP08670 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VIMP08670 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
VIMP08670 AL157384.1-201ENST00000445995 2473 ntBASIC21.89■■□□□ 1.09
VIMP08670 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VIMP08670 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
VIMP08670 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
VIMP08670 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VIMP08670 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VIMP08670 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
VIMP08670 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
VIMP08670 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VIMP08670 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
VIMP08670 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VIMP08670 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VIMP08670 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
VIMP08670 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.88■■□□□ 1.09
VIMP08670 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
VIMP08670 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.88■■□□□ 1.09
VIMP08670 AC244015.2-201ENST00000616358 1861 ntBASIC21.88■■□□□ 1.09
VIMP08670 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
VIMP08670 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.87■■□□□ 1.09
VIMP08670 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.87■■□□□ 1.09
VIMP08670 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
VIMP08670 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VIMP08670 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VIMP08670 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.87■■□□□ 1.09
VIMP08670 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms